Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_012638.1
Length=165429
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 210 2e-49
seq249645 116 4e-21
seq127984 86.0 7e-12
seq252826 84.2 2e-11
>seq26767
Length=1149
Score = 210 bits (232), Expect = 2e-49
Identities = 321/453 (71%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 138377 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138436
|||||| | ||| | || || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 138437 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138496
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 138497 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 138556
||| || || || || | || ||| || || ||||| ||||| |||||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 138557 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138616
||| ||||||||||| ||||||||| | |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 138617 GGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTAGAGATATATTCAACAAT 138676
|||||||| | ||| | |||||||||||||| || |||| ||| | ||||| |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 138677 TGA---AGCGGAAGCCTTATTGATAGACT-TCAATGA--ATCACCTGCCTCAATAACAAC 138730
|| || | ||| ||| ||||| | | || | ||||| | ||||| | |||
Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 386
Query 138731 ACATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 138790
|||||| ||||| || ||||| ||||| | |||| |||||| || || || || ||
Sbjct 387 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 446
Query 138791 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 138823
||| | ||| || | || | |||||||||
Sbjct 447 AATTTTGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 116 bits (128), Expect = 4e-21
Identities = 272/408 (67%), Gaps = 12/408 (3%)
Strand=Plus/Minus
Query 138392 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 138451
||| || || || ||||||||||| | ||||| ||||| || || ||||||||| |
Sbjct 264951 CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAG 264892
Query 138452 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 138511
|| || | |||||||| |||||||| | || || | || ||||| |||||
Sbjct 264891 TACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCC 264832
Query 138512 ACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAAT 138571
||| | ||||| ||||| || ||||||| || || || || ||| ||||||||||
Sbjct 264831 ACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAAT 264772
Query 138572 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCGGCACGAATCAT 138628
| |||||||| || ||||||| |||| ||| ||| |||||| ||
Sbjct 264771 ACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACG 264715
Query 138629 ACCAACGTTAATACCAATTCCAGCACGTTTAGAGATATATTCAACAATTG---AAGCGGA 138685
||| |||| || || || |||||||| | || | ||| || || | || ||
Sbjct 264714 ACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGT 264655
Query 138686 AGCCTTATTGATAGACTTCAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTG 138745
|| |||||||| | || |||||| || || | || || || ||||||||
Sbjct 264654 GGC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTG 264598
Query 138746 CCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 138793
|| | ||| ||||| ||| | ||| || || ||||| | ||| ||
Sbjct 264597 ACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 137436 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 137495
||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| |
Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857
Query 137496 CCACGTGGAGGCTCGATACCGTTTGT 137521
|||||||| |||||||||||||| ||
Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831
>seq127984
Length=21361
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 68676 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 68735
||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856
Query 68736 GCCATTATACGATATCCGCAAA 68757
||| || || | | |||||||
Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834
>seq252826
Length=193385
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 68424 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 68483
|||||| || || ||| ||||||| | |||||| || ||||||||| ||||||||||||
Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963
Query 68484 ACTGAGCTAAATCAGC 68499
|||||||||| || ||
Sbjct 191962 ACTGAGCTAAGTCGGC 191947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 527476937132320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |