Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq26767 210 2e-49 seq249645 116 4e-21 seq127984 86.0 7e-12 seq252826 84.2 2e-11 >seq26767 Length=1149 Score = 210 bits (232), Expect = 2e-49 Identities = 321/453 (71%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 138377 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138436 |||||| | ||| | || || ||||||| | ||||| | | |||||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 138437 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138496 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 138497 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 138556 ||| || || || || | || ||| || || ||||| ||||| |||||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 138557 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138616 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 138617 GGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTAGAGATATATTCAACAAT 138676 |||||||| | ||| | |||||||||||||| || |||| ||| | ||||| ||||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 138677 TGA---AGCGGAAGCCTTATTGATAGACT-TCAATGA--ATCACCTGCCTCAATAACAAC 138730 || || | ||| ||| ||||| | | || | ||||| | ||||| | ||| Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 386 Query 138731 ACATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 138790 |||||| ||||| || ||||| ||||| | |||| |||||| || || || || || Sbjct 387 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 446 Query 138791 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 138823 ||| | ||| || | || | ||||||||| Sbjct 447 AATTTTGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 116 bits (128), Expect = 4e-21 Identities = 272/408 (67%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 138392 CTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 138451 ||| || || || ||||||||||| | ||||| ||||| || || ||||||||| | Sbjct 264951 CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAG 264892 Query 138452 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 138511 || || | |||||||| |||||||| | || || | || ||||| ||||| Sbjct 264891 TACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCC 264832 Query 138512 ACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAAT 138571 ||| | ||||| ||||| || ||||||| || || || || ||| |||||||||| Sbjct 264831 ACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAAT 264772 Query 138572 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCGGCACGAATCAT 138628 | |||||||| || ||||||| |||| ||| ||| |||||| || Sbjct 264771 ACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACG 264715 Query 138629 ACCAACGTTAATACCAATTCCAGCACGTTTAGAGATATATTCAACAATTG---AAGCGGA 138685 ||| |||| || || || |||||||| | || | ||| || || | || || Sbjct 264714 ACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGT 264655 Query 138686 AGCCTTATTGATAGACTTCAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTG 138745 || |||||||| | || |||||| || || | || || || |||||||| Sbjct 264654 GGC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTG 264598 Query 138746 CCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 138793 || | ||| ||||| ||| | ||| || || ||||| | ||| || Sbjct 264597 ACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 137436 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 137495 ||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| | Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857 Query 137496 CCACGTGGAGGCTCGATACCGTTTGT 137521 |||||||| |||||||||||||| || Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831 >seq127984 Length=21361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 68676 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 68735 ||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 68736 GCCATTATACGATATCCGCAAA 68757 ||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 68424 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 68483 |||||| || || ||| ||||||| | |||||| || ||||||||| |||||||||||| Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963 Query 68484 ACTGAGCTAAATCAGC 68499 |||||||||| || || Sbjct 191962 ACTGAGCTAAGTCGGC 191947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527476937132320