Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq26664 141 8e-29 seq78792 125 6e-24 seq26661 113 4e-20 seq210337 105 6e-18 seq117562 105 6e-18 seq66861 105 6e-18 seq91578 100 3e-16 seq214945 98.7 9e-16 seq153189 89.7 5e-13 seq54724 89.7 5e-13 >seq26664 Length=6282 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||| |||||||||||||| ||||| || || ||| | Sbjct 5646 CCACCACGGAGACGAAGCACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCG 5705 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | ||||||||| ||| | |||||||| ||||||||||| || Sbjct 5706 AGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAAGATCAATCGCTGCTGGTCCGGTGGG 5765 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || ||||| || | ||| ||||| || ||||| Sbjct 5766 ATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTATCGGATGATTCGACC 5825 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| | ||| || |||||||| ||||| || || || |||||| Sbjct 5826 TCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCATC 5873 >seq78792 Length=14290 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| ||||| |||||||| ||||| || |||||| || ||| | || ||| Sbjct 11651 ACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTCC 11592 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||||||||| || | ||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 11591 AATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGG 11532 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | || | ||||| ||||| || || || || || | || || Sbjct 11531 ATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACCTCTAGGGTTATTGTCTTC 11472 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || || || ||||| Sbjct 11471 CCCGTTAGGGTTTTCACGAAGATCTGCAT 11443 >seq26661 Length=2801 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | || || ||||| ||||||||||| || || ||| Sbjct 1859 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCG 1800 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||| ||||| ||| | ||||||| ||||||||||| Sbjct 1799 GCTAGAGTTCGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGA 1740 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || |||||| ||| | || | || | |||||| || ||| Sbjct 1739 GGGATACCTTCCTTGTCCTGGATTTTTGCTTTCA-CGTTATCAATGGTGTCTGAGCTCTC 1681 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||| || ||||| || | || || ||||| || ||||| Sbjct 1680 GACCTCGAGGGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || ||||| | || ||||| || || || ||||||||||| || || ||| Sbjct 1403 ATACCTCCACGAAGCCTGAGGACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCG 1344 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || || | ||| ||||| ||| | ||||| | ||||||||||| Sbjct 1343 GCGAGAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGT 1284 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || |||| || | |||||| ||| ||| Sbjct 1283 GGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCA 1224 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| ||| ||||| || | ||| || || || || ||||| Sbjct 1223 ACCTCGAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1174 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| | || |||||||||||||||||||| || ||||| Sbjct 1175 ATACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCC 1116 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| ||||| || | || | | ||||| ||||| Sbjct 1115 GCCAAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGA 1056 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || | | |||| | | || | || | ||||| ||| || Sbjct 1055 GGAATACCTTCCTTGTCCTGGA-TCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTC 997 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || || ||||| |||||||| || || || |||||| Sbjct 996 CACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | ||||| || |||||||| || || ||||| ||| Sbjct 2087 ATACCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCG 2028 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | || | | ||| || | || || || ||| | || | || |||||||||| Sbjct 2027 --GCCAGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCG 1970 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| |||||||| || ||||| || ||| | || | || | |||||| || | Sbjct 1969 GAGGAATACCTTCTTTGTCCTGAATCTTAGCTTTCA-CGTTGTCGATGGTGTCTGAGCTC 1911 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || |||| || || || || | || || || || |||||||| Sbjct 1910 TCCACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1858 >seq210337 Length=1863 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| ||||| || | ||| ||| || | |||| Sbjct 1522 TGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGTTGT 1581 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||||||||||||| ||||| ||||| ||||| || || || || ||| Sbjct 1582 TTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGGATCTTT 1641 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| || |||||| |||||||| | || || || || Sbjct 1642 GCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTTATGGTCTTTCCAGT 1700 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || || ||||||||| Sbjct 1701 AAGCGTTTTCACGAATATTTGCATC 1725 >seq117562 Length=2070 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| ||||| || | ||| ||| || | ||| Sbjct 1205 TGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGCTGT 1146 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||||||||||||| ||||| ||||| ||||| || || || || ||| Sbjct 1145 TTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGGATCTTT 1086 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| || |||||| |||||||| | || || || || Sbjct 1085 GCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTTATGGTCTTTCCAGT 1027 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| || || ||||||||| Sbjct 1026 GAGAGTTTTCACGAATATTTGCATC 1002 >seq66861 Length=20397 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || ||||| |||||||| ||||| || || ||| | Sbjct 17486 CCACCACGGAGACGAAGGACAAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 17427 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | ||||||||| ||| | |||||||||||||| ||||| || Sbjct 17426 AGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCGTTGCTGATCCGGTGGG 17367 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || |||| || | || ||||| || || || Sbjct 17366 ATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATTGTCGATCGTATCGGATGATTCAACC 17307 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || ||||| ||||| || || || |||||| Sbjct 17306 TCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 17259 >seq91578 Length=16840 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || ||||| || ||||||||||| ||||| || || ||| | Sbjct 242 CCACCACGGAGACGAAGGACGAGATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGCG 301 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | ||||||||| ||| | ||||||||||| || ||||| || Sbjct 302 AGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGTTGTTGATCCGGTGGG 361 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || |||| || | || || || || || || Sbjct 362 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATCGTATCCGATGATTCAACC 421 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || ||||| ||||| || || || |||||| Sbjct 422 TCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 469 >seq214945 Length=15579 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || || || |||||||||||||||||||| |||||| Sbjct 7760 ATCCCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCG 7819 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||||| || || | |||| | ||| | ||| | Sbjct 7820 GCCAAAGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAGGCTTTGTTTGTCAGAA 7879 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || | |||||||| ||||| || || |||| |||||||||||| || ||| Sbjct 7880 GGGACTCCTTCTTTCTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCCGAGCTTTCG 7939 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || ||||| | | || ||||| || ||||| ||||| || |||||||||| Sbjct 7940 ACCTCGAGGGATATGGTCTTGCCTGTAAGAGTCTTTACGAAGATTTGCATCG 7991 >seq153189 Length=17048 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | ||||| | |||| ||||| |||||||| || || ||||| Sbjct 14963 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14904 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | ||||| || ||| | || | || ||||||||||| || Sbjct 14903 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14844 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || || || || || |||| || | || | |||||| || |||||| Sbjct 14843 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTCTCGAC 14785 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || | || ||||| || ||||| || || ||||| ||||| Sbjct 14784 TTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737 >seq54724 Length=7877 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | || || || || || || || ||||| || ||| Sbjct 2104 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCG 2045 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||| ||||| || | ||||||| ||||||||||| Sbjct 2044 GCCAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGA 1985 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| || || || || ||| | || | || | |||||| || ||| Sbjct 1984 GGGATACCTTCTTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCTGAGCTCTC 1926 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| ||||| ||||| | || || ||||| || ||||| Sbjct 1925 AACCTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450493351110880