Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq249645 154 2e-32 seq26767 152 5e-32 >seq249645 Length=476466 Score = 154 bits (170), Expect = 2e-32 Identities = 289/417 (69%), Gaps = 17/417 (4%) Strand=Plus/Minus Query 139688 TTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCC---TTATTG 139744 |||| |||||||||||| || | |||||| | ||||| ||||| || || ||||| Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897 Query 139745 TTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGC 139803 || || || ||| |||| ||| ||||||||||||| |||||| | | ||||| Sbjct 264896 TTGAGTACCAGTAAT--GACT--CAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGC 264841 Query 139804 CGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCA 139863 || |||||||| | ||| ||||||||||| | ||||||||||| || || ||| | Sbjct 264840 AGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATA 264781 Query 139864 GAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCC----G 139919 || || ||| ||||||||| | ||||||| | || ||| || || | Sbjct 264780 AAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGA---TAG-GGCTACCAAGGG 264725 Query 139920 CGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTG 139979 | || || || |||||||| |||||||||||||||| | ||| | ||| | Sbjct 264724 CACGGATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGG 264665 Query 139980 CATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACACGAAC 140039 | | | || ||||||| | || ||| ||| |||||| | || ||||| | Sbjct 264664 CGCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGC 264605 Query 140040 TAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTT 140096 |||| || || | ||| ||||||||||||| ||| || || || ||||| ||||||| Sbjct 264604 TAAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT 264548 >seq26767 Length=1149 Score = 152 bits (168), Expect = 5e-32 Identities = 303/446 (68%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 139678 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 139737 ||||| |||||||| ||||| | ||||||| ||||| | | || ||||| | || Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 139738 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAG 139797 | |||| || ||||| || | | |||||||| || |||||||||||||| ||| | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 139798 AGTCGCCGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATG 139857 ||| ||||| || || | || || ||||| || || || || || || | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 139858 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 139917 ||| | || || ||| ||||||||| |||| |||| | || | ||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 139918 CGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGAT 139977 || ||||| | ||||| || ||||| || || || || | || ||| || | || Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 139978 TGCATTTGCTGTTTCGTTGATGCCCTGCA-ATGAGTCATCACTTTCGATCACCACACACG 140036 | | | | || |||| || | | || | ||||||| ||| || | ||||| | Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTA-TCATCACATTCAATTAAAACACATG 391 Query 140037 AACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTT 140096 | |||||||| || || || || | || || | |||||| || || |||| ||| |||| Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451 Query 140097 GCTTATTCGCAACAGCATTATAAAAA 140122 | | | || |||||||||||| Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAA 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530631165592640