Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_012740.1
Length=166418
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 154 2e-32
seq26767 152 5e-32
>seq249645
Length=476466
Score = 154 bits (170), Expect = 2e-32
Identities = 289/417 (69%), Gaps = 17/417 (4%)
Strand=Plus/Minus
Query 139688 TTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCC---TTATTG 139744
|||| |||||||||||| || | |||||| | ||||| ||||| || || |||||
Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897
Query 139745 TTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGC 139803
|| || || ||| |||| ||| ||||||||||||| |||||| | | |||||
Sbjct 264896 TTGAGTACCAGTAAT--GACT--CAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGC 264841
Query 139804 CGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCA 139863
|| |||||||| | ||| ||||||||||| | ||||||||||| || || ||| |
Sbjct 264840 AGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATA 264781
Query 139864 GAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCC----G 139919
|| || ||| ||||||||| | ||||||| | || ||| || || |
Sbjct 264780 AAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGA---TAG-GGCTACCAAGGG 264725
Query 139920 CGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTG 139979
| || || || |||||||| |||||||||||||||| | ||| | ||| |
Sbjct 264724 CACGGATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGG 264665
Query 139980 CATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACACGAAC 140039
| | | || ||||||| | || ||| ||| |||||| | || ||||| |
Sbjct 264664 CGCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGC 264605
Query 140040 TAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTT 140096
|||| || || | ||| ||||||||||||| ||| || || || ||||| |||||||
Sbjct 264604 TAAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT 264548
>seq26767
Length=1149
Score = 152 bits (168), Expect = 5e-32
Identities = 303/446 (68%), Gaps = 2/446 (0%)
Strand=Plus/Plus
Query 139678 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 139737
||||| |||||||| ||||| | ||||||| ||||| | | || ||||| | ||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 139738 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAG 139797
| |||| || ||||| || | | |||||||| || |||||||||||||| ||| | |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 139798 AGTCGCCGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATG 139857
||| ||||| || || | || || ||||| || || || || || || | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 139858 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 139917
||| | || || ||| ||||||||| |||| |||| | || | ||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 139918 CGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGAT 139977
|| ||||| | ||||| || ||||| || || || || | || ||| || | ||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 139978 TGCATTTGCTGTTTCGTTGATGCCCTGCA-ATGAGTCATCACTTTCGATCACCACACACG 140036
| | | | || |||| || | | || | ||||||| ||| || | ||||| |
Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTA-TCATCACATTCAATTAAAACACATG 391
Query 140037 AACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTT 140096
| |||||||| || || || || | || || | |||||| || || |||| ||| ||||
Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451
Query 140097 GCTTATTCGCAACAGCATTATAAAAA 140122
| | | || ||||||||||||
Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAA 477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530631165592640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |