Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq26767 172 6e-38 seq249645 125 8e-24 >seq26767 Length=1149 Score = 172 bits (190), Expect = 6e-38 Identities = 260/370 (70%), Gaps = 0/370 (0%) Strand=Plus/Plus Query 143038 TTTTCATCGACACCTTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAA 143097 ||||| || | || | || ||||| | ||| | | | |||||| ||| |||||||| Sbjct 79 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 138 Query 143098 ATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACA 143157 || |||||| | ||| || || || || | | ||| ||||| ||||| ||||| ||| Sbjct 139 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 198 Query 143158 GCAGTCTGGAAATGTTTCCAGAATGGAATAACACCAGTATGTTTGACTTCACCCATGCCA 143217 ||| | || |||||||| | || |||||| ||||||||| |||| || | | | Sbjct 199 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 258 Query 143218 ATACGAGAACCTTCAGCACGAATCATACCAACGTTAATACCAATACCTGCACGTTTAGAA 143277 ||| || |||| | |||||||| | ||| | ||||||||||| ||||| |||| |||| Sbjct 259 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 318 Query 143278 ATGTATTCAATTATTGAGTTTGCAGTTTTGTTAATAGATTTCAGTGAGTCACCTGCTTCA 143337 | |||| | || || | | ||| ||||||||| | || ||| | |||| Sbjct 319 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 378 Query 143338 ATAACAACACAAGAACTAAATTGACGGGTTGGAGTACGTGCACCAGCCATAATAGGAGTA 143397 || | |||||| || |||||||| || || ||||| | | |||| |||||| || || Sbjct 379 ATTAAAACACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTC 438 Query 143398 GGCAACGAAA 143407 || || |||| Sbjct 439 GGTAAAGAAA 448 >seq249645 Length=476466 Score = 125 bits (138), Expect = 8e-24 Identities = 272/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 143001 GTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTTTCATCGACACCTTTGTTGTT 143060 ||||||||| | ||||||||||||||||| | |||||| || || ||||| ||| || Sbjct 264957 GTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATT 264898 Query 143061 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 143120 ||| || || || | |||||||| |||||||| | || || | || ||||| Sbjct 264897 TTTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGC 264838 Query 143121 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAA 143180 |||||||| | ||||||||||| || ||||||| || || ||||| ||| | || Sbjct 264837 ACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAA 264778 Query 143181 TGGAATAACACCAGTATGTTTGACTTCACCCATGCCA---ATACGAGAACCTTCAGCACG 143237 |||||| |||||||| | ||||||| |||| ||| | ||| ||||| Sbjct 264777 AGGAATACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACG 264721 Query 143238 AATCATACCAACGTTAATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTT 143297 || ||| |||| || || ||||| ||||| | || | || | || | | | Sbjct 264720 GATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCT 264661 Query 143298 TGCAGTTTTGTTAATAGA-TTTCAGTGAGTCACCTGCTTCAATAACAACACAAGAACTAA 143356 | || ||| ||||| | | || | ||||| ||| || | || || || |||| Sbjct 264660 AGTGGTGGCGTTGATAGAGTCTAAGCTA-TCACCACATTCGATTAAGACGCACGAGCTAA 264602 Query 143357 ATTGACGGGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGG 143399 | ||||| | ||| ||||| |||| | ||| || || || || Sbjct 264601 ACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGG 264559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546682967251680