Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq6041 134 4e-27 seq260187 87.8 5e-13 >seq6041 Length=422222 Score = 134 bits (148), Expect = 4e-27 Identities = 163/221 (74%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961 || || || || |||||||| || | || || || || || || || || || ||||| Sbjct 190437 ATTGCCCTATCTCAGCTTAACCGTAGTCTAGAAAACCGTCCGAATAAACGCCCTATCATG 190378 Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021 || |||||||| || || |||||||| |||||||||||||| |||| | || ||||| Sbjct 190377 TCGGATCTGCGAGAATCTGGTGCGATTGAGCAGGATGCCGATTTGATTATGTTCATCTAT 190318 Query 9022 CGCGATGAGGTCTAT------AACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATC 9075 || |||||||| ||| ||| ||||| || | | ||| ||| ||||||||| Sbjct 190317 CGTGATGAGGTTTATAATGAGAACTCCGAC----CACAAAGGGGT--GGCTGAAATCATC 190264 Query 9076 ATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCT 9116 |||| || ||||| ||||| |||||||| ||||| || || Sbjct 190263 ATTGGTAAACAGCGTAACGGCCCGATTGGTACCGTGCGACT 190223 >seq260187 Length=34880 Score = 87.8 bits (96), Expect = 5e-13 Identities = 171/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 8884 GAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGC--TCGAGAATCGCC 8941 |||||||| || || |||| ||| | || ||| | |||| ||| | |||| || | Sbjct 26620 GAACTCGAAGTCCCCGTCATTGCGTTATCCCAGTT--ATCGCGGGGAGTGGAGAGCCGGC 26677 Query 8942 CAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCG 9001 | || ||||| | ||||||||| | || || || || ||||||||||||||||||| Sbjct 26678 AGGATAAACGGCCGATGATGTCCGATATCCGGGAATCCGGAGCGATCGAGCAGGATGCCG 26737 Query 9002 ACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCG-GT 9060 | | || || | ||||||||||| ||| ||| || | | |||| ||| Sbjct 26738 ATATCGTCGCTTTCTTGTACCGCGATGATTACTACAACAAAGAAACGGAAGAT-GCGAAC 26796 Query 9061 ACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTCGCA 9120 ||| || |||||||| || |||||||| || || |||| || ||||| || || Sbjct 26797 ACGATTGAGATCATCATCGCCAAGCAGCGGAATGGTCCGACCGGTACCGTCAAACTTGCC 26856 Query 9121 TTCCAGAA 9128 |||| ||| Sbjct 26857 TTCCGGAA 26864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127140855402288