Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 700 0.0
seq218717 150 2e-31
seq180749 89.7 6e-13
seq126115 86.0 8e-12
>seq28607
Length=83266
Score = 700 bits (776), Expect = 0.0
Identities = 751/993 (76%), Gaps = 0/993 (0%)
Strand=Plus/Plus
Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587
|||| ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 510 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 569
Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647
||||| ||||||||| | | || ||||| || || | ||||| ||||||| |||
Sbjct 570 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 629
Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707
|| | || |||||||| |||||||| || |||||||| ||||||||||||| ||| |
Sbjct 630 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 689
Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767
|||||| ||||| || || || || ||||| || || | |||||| || | ||||| ||
Sbjct 690 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 749
Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827
|||||||| ||| ||||||||||||| || ||||| || || |||||||| || ||
Sbjct 750 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 809
Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887
|||||| || ||||||||||| ||||| || ||||| | || || ||| || ||
Sbjct 810 GTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGT 869
Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947
|||||| | | || | ||| ||||| | ||||||||||| ||||| || || || ||
Sbjct 870 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 929
Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007
|| || |||||||| || || | |||||| || |||||||| || ||||||||||| ||
Sbjct 930 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 989
Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067
||||| |||| ||| ||||||| ||||||||||| || ||||||||| | ||||| ||
Sbjct 990 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 1049
Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127
| |||||||| | || |||| | ||| ||||||| ||| || ||||| ||||| ||
Sbjct 1050 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1109
Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187
||||| ||| ||||| ||||||||||| |||||| || ||||||||||||||||||
Sbjct 1110 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1169
Query 8188 CATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247
||| || | | ||| | | ||||| | | || |||| ||||||| |||||
Sbjct 1170 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1229
Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307
||| ||||| ||||||| || || ||||||||||| || || || || | |||||||||
Sbjct 1230 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 1289
Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367
||||| ||||| || ||||| || || || ||||| || || | || || ||||
Sbjct 1290 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1349
Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427
|| |||||||| || || ||||| || || ||||||||||| | ||| |||| || ||
Sbjct 1350 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1409
Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487
| || || | | | ||||| ||||||| ||||| ||||| || | || ||
Sbjct 1410 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1469
Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520
|||||| | ||| ||||| ||||||||||||
Sbjct 1470 ACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1502
Score = 554 bits (614), Expect = 6e-153
Identities = 733/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Minus
Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322
|||||||| || | ||| | || || ||||| |||| || ||||||||| || |||||
Sbjct 33416 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33357
Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382
| |||||||| ||||| | |||||| || || || || || || |||||||| |||
Sbjct 33356 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 33297
Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442
|| || || ||||| |||||||| | ||| || || ||||| |||||||| || | |||
Sbjct 33296 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 33237
Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502
|| | || || || | | |||| | |||| | ||| | || || |||||
Sbjct 33236 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 33177
Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562
| |||||||||||||| |||||| |||||| || || | |||||||| || |||||
Sbjct 33176 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 33117
Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622
|| || ||||| |||||||| ||||| || || || |||| || || | ||| || |
Sbjct 33116 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 33057
Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682
|| ||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 33056 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 32997
Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742
|| || |||| || | || | | ||| || || |||||||||||||| ||||| |
Sbjct 32996 GCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 32937
Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802
||||| || || || || || | ||||| | ||| || ||||| || || ||||||||
Sbjct 32936 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 32877
Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862
|||||||||||||||| || || || || ||||| || || |||||||| |||||
Sbjct 32876 CTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAAGACAGAAACAAAA 32817
Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921
|||||||| |||||||| || ||||||||||| || || || | | || || || ||
Sbjct 32816 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACGGATCGAGC 32758
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
| ||||| || || | ||| |||||||| | || || || |||||||| || |||||
Sbjct 32757 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAA 32698
Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041
|| ||| || || || | ||| ||| || |||||||| || ||||| ||||||||
Sbjct 32697 AGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 32638
Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101
|| | | | ||||| | | | | ||||||||| || || ||||| || | ||
Sbjct 32637 CAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTTAAAAA 32578
Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161
||| || || || | ||| ||| ||| | || ||||| ||||| || || || ||
Sbjct 32577 ATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 32518
Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221
||| || |||| |||||| || | || | || ||| ||| || || | ||||| ||
Sbjct 32517 TGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGA 32458
Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275
|||||| ||||||||||| | || | | | ||||||||| | | ||||||
Sbjct 32457 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32404
>seq218717
Length=448
Score = 150 bits (166), Expect = 2e-31
Identities = 166/220 (75%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 7975 GTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGT 8034
||| || |||||||| || ||||||||||| || ||||| |||| || ||||||| ||
Sbjct 7 GTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGT 66
Query 8035 ACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAG 8094
|| |||||| || ||||||||| | | | | ||| |||||||| | ||||| | |
Sbjct 67 ACAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAA 126
Query 8095 GAATACAGCAGATGCTGCAGC-AACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCA 8153
||| ||| || || || || ||| ||||| || ||||| ||| ||||| |||||||
Sbjct 127 GAAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCA 186
Query 8154 TACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193
|||| |||| || ||||||||||||||||| ||| ||
Sbjct 187 TACCCAGACATAAACTAAGTTCCCACTCACGACTCATATA 226
>seq180749
Length=15184
Score = 89.7 bits (98), Expect = 6e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308
|| ||||||| | |||| || |||| || || || | ||||| |||||||| |||||
Sbjct 11133 GTAGGATAAGCAGCACAAGTGAGAACAAATCCTTCAGCAATCTGATCATCATCGAGGAAA 11074
Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368
|| || ||||| || || || || | | ||| |||||||| || ||||| | |
Sbjct 11073 CTCTGGTCAGACTGATCAACAGTTCCAGACTTAACTTTACCTGCACAGCTAGAACATGAA 11014
Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427
|||| ||||| ||||| | || || |||||||||||||| || || || | |||
Sbjct 11013 CCAGAGCGGCAAGAGTAAGGCAAATCGATTCCTGCTTCTTCAGCTGCGTCGAGGACGTA 10955
>seq126115
Length=32928
Score = 86.0 bits (94), Expect = 8e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 32017 CAAGTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGC 32076
|||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 15069 CAAGAGGGATTCGAACCCCCGACCGACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGC 15128
Query 32077 TATTGAG 32083
|||||||
Sbjct 15129 TATTGAG 15135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620046685424320
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