Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq28607 700 0.0 seq218717 150 2e-31 seq180749 89.7 6e-13 seq126115 86.0 8e-12 >seq28607 Length=83266 Score = 700 bits (776), Expect = 0.0 Identities = 751/993 (76%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587 |||| ||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 510 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 569 Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647 ||||| ||||||||| | | || ||||| || || | ||||| ||||||| ||| Sbjct 570 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 629 Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707 || | || |||||||| |||||||| || |||||||| ||||||||||||| ||| | Sbjct 630 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 689 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 |||||| ||||| || || || || ||||| || || | |||||| || | ||||| || Sbjct 690 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 749 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 |||||||| ||| ||||||||||||| || ||||| || || |||||||| || || Sbjct 750 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 809 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || ||||||||||| ||||| || ||||| | || || ||| || || Sbjct 810 GTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGT 869 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947 |||||| | | || | ||| ||||| | ||||||||||| ||||| || || || || Sbjct 870 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 929 Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007 || || |||||||| || || | |||||| || |||||||| || ||||||||||| || Sbjct 930 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 989 Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067 ||||| |||| ||| ||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 990 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 1049 Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127 | |||||||| | || |||| | ||| ||||||| ||| || ||||| ||||| || Sbjct 1050 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1109 Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187 ||||| ||| ||||| ||||||||||| |||||| || |||||||||||||||||| Sbjct 1110 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1169 Query 8188 CATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247 ||| || | | ||| | | ||||| | | || |||| ||||||| ||||| Sbjct 1170 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1229 Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307 ||| ||||| ||||||| || || ||||||||||| || || || || | ||||||||| Sbjct 1230 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 1289 Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367 ||||| ||||| || ||||| || || || ||||| || || | || || |||| Sbjct 1290 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1349 Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427 || |||||||| || || ||||| || || ||||||||||| | ||| |||| || || Sbjct 1350 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1409 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 | || || | | | ||||| ||||||| ||||| ||||| || | || || Sbjct 1410 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1469 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 |||||| | ||| ||||| |||||||||||| Sbjct 1470 ACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1502 Score = 554 bits (614), Expect = 6e-153 Identities = 733/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 33416 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33357 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || |||||||| ||| Sbjct 33356 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 33297 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 33296 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 33237 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || || || | | |||| | |||| | ||| | || || ||||| Sbjct 33236 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 33177 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 33176 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 33117 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 33116 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 33057 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 33056 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 32997 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || | | ||| || || |||||||||||||| ||||| | Sbjct 32996 GCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 32937 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| || || |||||||| Sbjct 32936 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 32877 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| || || || || ||||| || || |||||||| ||||| Sbjct 32876 CTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAAGACAGAAACAAAA 32817 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| |||||||| || ||||||||||| || || || | | || || || || Sbjct 32816 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACGGATCGAGC 32758 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| | || || || |||||||| || ||||| Sbjct 32757 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAA 32698 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 32697 AGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 32638 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | ||||| | | | | ||||||||| || || ||||| || | || Sbjct 32637 CAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTTAAAAA 32578 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| ||| | || ||||| ||||| || || || || Sbjct 32577 ATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 32518 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| || | || | || ||| ||| || || | ||||| || Sbjct 32517 TGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGA 32458 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 32457 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32404 >seq218717 Length=448 Score = 150 bits (166), Expect = 2e-31 Identities = 166/220 (75%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 7975 GTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGT 8034 ||| || |||||||| || ||||||||||| || ||||| |||| || ||||||| || Sbjct 7 GTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGT 66 Query 8035 ACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAG 8094 || |||||| || ||||||||| | | | | ||| |||||||| | ||||| | | Sbjct 67 ACAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAA 126 Query 8095 GAATACAGCAGATGCTGCAGC-AACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCA 8153 ||| ||| || || || || ||| ||||| || ||||| ||| ||||| ||||||| Sbjct 127 GAAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCA 186 Query 8154 TACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 |||| |||| || ||||||||||||||||| ||| || Sbjct 187 TACCCAGACATAAACTAAGTTCCCACTCACGACTCATATA 226 >seq180749 Length=15184 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| | |||| || |||| || || || | ||||| |||||||| ||||| Sbjct 11133 GTAGGATAAGCAGCACAAGTGAGAACAAATCCTTCAGCAATCTGATCATCATCGAGGAAA 11074 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || ||||| || || || || | | ||| |||||||| || ||||| | | Sbjct 11073 CTCTGGTCAGACTGATCAACAGTTCCAGACTTAACTTTACCTGCACAGCTAGAACATGAA 11014 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 |||| ||||| ||||| | || || |||||||||||||| || || || | ||| Sbjct 11013 CCAGAGCGGCAAGAGTAAGGCAAATCGATTCCTGCTTCTTCAGCTGCGTCGAGGACGTA 10955 >seq126115 Length=32928 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 32017 CAAGTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGC 32076 |||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||| Sbjct 15069 CAAGAGGGATTCGAACCCCCGACCGACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGC 15128 Query 32077 TATTGAG 32083 ||||||| Sbjct 15129 TATTGAG 15135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620046685424320