Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq248505 111 2e-19 seq251147 102 1e-16 seq146431 89.7 6e-13 seq90345 87.8 2e-12 seq229172 86.0 8e-12 >seq248505 Length=7796 Score = 111 bits (122), Expect = 2e-19 Identities = 260/384 (68%), Gaps = 14/384 (4%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 || ||||| | ||| ||||| |||||||| ||||| | || ||| | |||||| Sbjct 4759 ACCGTGATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCA 4818 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATC---GAAGCCATCCATCTCA 12806 ||||| || || ||||| | | ||| || ||||| || ||| |||||||||||| Sbjct 4819 CGGTTTGTTGCTGCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCA 4875 Query 12807 GTCAAG-AGTTGATTGATGGTTTGTTCACGTTCATCA--TTCGCGGGCATACCACCCGCA 12863 |||| ||||| || | |||||||| || |||||| | ||| | | | ||| || Sbjct 4876 -ACAAGAAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCT 4932 Query 12864 CTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCA 12923 | ||||| ||| || || ||||| || || ||||| | |||||| || |||| Sbjct 4933 CCACGTTGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTC 4992 Query 12924 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 ||| |||||| | || || || | ||||||||||| ||||||||||| || Sbjct 4993 TTCGCATTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACG 5052 Query 12984 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 13042 || | | | ||| || | || ||| || ||| || |||||| || || ||||| Sbjct 5053 AAGTCAGAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGC 5111 Query 13043 GAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || || || || ||||| Sbjct 5112 AAGCAATGTTTTACCTGTACCTGG 5135 >seq251147 Length=238287 Score = 102 bits (112), Expect = 1e-16 Identities = 251/374 (67%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 |||||| || ||||||||||| | || || | ||||| | || ||||| ||||| Sbjct 146654 ACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCACGGTTGGTCGC 146595 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || |||| || | ||| |||||| || || || ||||||||| ||| | || Sbjct 146594 AGCAATGATAATAACGCC---TTCGTTACCTTCAAAACCGTCCATCTCAACCAATAACTG 146538 Query 12818 ATTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTT 12874 || | ||||| ||||| |||||||| | | | | | ||| | || || || Sbjct 146537 GTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTTCCA---GAACCACGATGACG 146481 Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||| || || ||||| || || ||||| | ||||| ||| | ||| || ||| Sbjct 146480 ACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTTCGCCTGTTC 146421 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||| ||||| || || | ||||| ||||| |||||||| || || |||| | | Sbjct 146420 AAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAATCAGAACC 146361 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 ||| || | | ||| || || |||| |||||| || ||||||| ||| | || || | Sbjct 146360 TGAA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAATAGCGTTT 146302 Query 13054 TCCCCGTCCCTGGT 13067 | || || |||||| Sbjct 146301 TACCAGTACCTGGT 146288 >seq146431 Length=15796 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||| ||||| || ||||| | ||| || |||||| | || |||||||| || Sbjct 4142 GTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTTAATCCAGGCATGAGTCC 4201 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | ||||||||||| ||| || || ||||||||||| || || ||||| Sbjct 4202 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAGAAGATACCTTCAACACA 4261 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| || | | || || ||||| Sbjct 4262 AGCGAAAGCTACGATTCGTTCAGCAAA 4288 >seq90345 Length=8683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||||||||||||||| |||||||| || ||||| | |||||||| | Sbjct 4951 GAAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCC--A 4894 Query 12851 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | || ||| || | | ||| |||| || || ||||| || |||||||| || ||| Sbjct 4893 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATA 4834 Query 12909 CACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGAC 12964 || || ||| |||| || ||||| | ||| | || || ||||| || Sbjct 4833 CAAGGTGCATTGGATTTC----GCCTTGTCAAACAAATCCCTAACCCTAGAAGCACCAAC 4778 Query 12965 ACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTC 13024 ||| || || | |||||| || | | || | || || ||| || || | ||| Sbjct 4777 ACCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGCTTC 4718 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || | |||| || | || |||||||||||||| || Sbjct 4717 TCCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676 >seq229172 Length=5357 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||||||||||||||| ||||| ||||| ||||| | |||||||| | | Sbjct 4803 AACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCC--AC 4860 Query 12852 ATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | || ||| || | | ||| |||| || || ||||| || ||||||||||| |||| Sbjct 4861 CTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATAC 4920 Query 12910 ACGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || || ||| | || ||||| | ||| | ||||| ||||| ||||| Sbjct 4921 AAGG-TGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACCG 4979 Query 12969 ACAAACATCTCCACAAA 12985 || || | |||||| || Sbjct 4980 ACGAAAAGCTCCACGAA 4996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611457871224480