Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_013645.1 Length=34882 Score E Sequences producing significant alignments: (Bits) Value seq114485 178 3e-40 seq219614 120 7e-23 seq57530 84.2 5e-12 >seq114485 Length=730 Score = 178 bits (196), Expect = 3e-40 Identities = 479/714 (67%), Gaps = 23/714 (3%) Strand=Plus/Plus Query 1257 GCTATTTTTGATGAAATTGGAGAAATTGAAACAAGGGATGCGGTTTCTAAGATTGTTTCT 1316 ||||||||||||||||| |||||| | |||| | ||| | | || || || | || Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62 Query 1317 GGGCAAGTAAAGGTGCCCAATAGGCAATTCATTCAAATCTCCACTGCCTACCCAAACCCA 1376 || ||||| || || || ||||||| |||| || || || || || || || || Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122 Query 1377 TCAGTTCCTTTCAGGGAAGACCAAAAGATTTTGCAGCAAGCCATGGAAGATGACGATAAT 1436 ||||||||| |||||||| ||||| | |||||||||||||| | || | || Sbjct 123 GGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACAAG 182 Query 1437 CGTGACGCCGATACGTATCTTTG--CTTAGTTTGGTCGCAAGATA-ACTTAGACGAGGTC 1493 || ||||| |||||||| ||| | |||| ||||| ||||||| | |||| | ||| Sbjct 183 CGAGACGCTGATACGTA-CTTAGGACTTA-TTTGGGCGCAAGACAGTCTTA-ATGAGACG 239 Query 1494 TTCCAACCAGAAACATGGGCAAAGAGCAATCCACTGCTAGACTTG-GAGAGCGAACGTGA 1552 ||| | || ||||| |||| ||||| |||||||| | |||||| || | || || Sbjct 240 TTCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAA---GA 296 Query 1553 GAA--CCTTATGAAAGGGTTAATGGACAAGCGAGATAGCGACCTGCTAAGTGGTAACCTC 1610 ||| | ||| |||| || |||||||||| ||||| ||| ||||| || | Sbjct 297 GAAGTGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATT 356 Query 1611 GCAGACTTCCAAGTTAAAAACATGAACTGCTGGCTACTTG-CTGA-CAGTAACAGCTTTC 1668 | |||||| ||| || ||| |||| ||||| | | | | ||| | || || | Sbjct 357 GGAGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAG--ATAG-TTAC 413 Query 1669 TTG-ATTTGAAAGATATCGAAAATGCAGTTATTCCTGAGTTTGACATACGTGGTAAGCGA 1727 ||| | | || || || ||| |||||||| ||||| || |||| | || Sbjct 414 TTGAAACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGT-CGTGA 472 Query 1728 -GTTTATGTAGGATTGGATGCATCAATGTTCAGCGATAATACAGCCATTGGCTTCGTCTA 1786 |||||| | || || || || |||||||||||||| || || ||| || || | Sbjct 473 TGTTTATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTT 532 Query 1787 TCCATACGTTGGTGAAGATGGAAGTCAAAAATGGCATATCGAACAGCACAGTTTCATTCC 1846 |||||| | | | ||||| | || | ||| | || | || || || ||||| Sbjct 533 TCCATATGAAGATAGCGATGGGA---AACACTGGTACATTGCTCAACATTCGTTTATTCC 589 Query 1847 TTGGCAGCAAGCAGGTTCGCTTGAGGCTAAGATGGAGCAGGACGGTGTCAATTATCGAGA 1906 |||||| |||| || || |||| || ||| |||| ||||| | || ||||| Sbjct 590 TTGGCAAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGA 649 Query 1907 CTTGGAAGCCAAGGGCTTTTGTACGATTACAAGCCATCCACAAGGGCTTATTAA 1960 ||| | | || ||||| || || || |||||||| |||||| |||| || Sbjct 650 GCTGGCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAA 703 >seq219614 Length=1033 Score = 120 bits (132), Expect = 7e-23 Identities = 301/460 (65%), Gaps = 9/460 (2%) Strand=Plus/Minus Query 822 ATCTGCCCAAACGTAGACACTGGTGAACCTACACAGTTGATGCCGTGGCAGAAATTTATT 881 || ||||| | || || || || || ||||| || | ||||| |||||| ||||| Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401 Query 882 TTGTGTATGCTTTTTGGGTGGAGAAATGCAAACGGTGGTAAACGTTTCAGCCGTGCCATT 941 |||| | ||| | || ||| | ||| | ||||||||||||| || || ||||| ||| Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341 Query 942 GTTTCAGTCGGTCGAGGTCAAGGTAAGACATACTTGATGGCTATTCTTACGGCGTATTCG 1001 ||| || | || |||||||| ||||| ||| ||||| | || || || || || Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281 Query 1002 TATTTTATTGAAAGCCTCGGACTTTCCAATCAGGACTATTTGGTTACATCAATCAACTTC 1061 ||||| ||||| || ||| | || || || || | || || |||| || || | | Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTAGCATCGATTAATTAC 221 Query 1062 AAACAAANNNACAAGTTGCTTGGTTACATCAAATCAATGATGAAGCAAATAATCCAAAAC 1121 || |||| || | ||| ||||||||| ||||||||| | || || || Sbjct 220 AAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCATTGCTAAT 161 Query 1122 GAACCTTTCAAGAGTTTGGCAAATGAAACTGAATTGGGCTTGCATAGT---------GAC 1172 |||||||| | | | || ||| || |||| |||||| ||| Sbjct 160 GAACCTTTTAGGTCGCTTGCGGCTGAGGTTGGCTTGGATACCCATAGTATTCAGTCAGAC 101 Query 1173 CAAGTTATTATGAAAGCAAACAACAACGTTTTGAGAGCTATATCTGCTGAGAGTGGGCAA 1232 || | ||||| ||||| ||||| || | | ||| ||| || ||| Sbjct 100 CAGATCCTTATGCGTAACAACAATAACGTGTTACGCCCAATAAGCCATGAATCGGGCCAA 41 Query 1233 TATGATAGTTTTCATTTTACCACGGCTATTTTTGATGAAA 1272 |||||||| | ||||||||| || || ||||||||||||| Sbjct 40 TATGATAGCTATCATTTTACGACAGCCATTTTTGATGAAA 1 >seq57530 Length=397 Score = 84.2 bits (92), Expect = 5e-12 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 5471 ACATTGTTTGACCGTCAACACTTGTCACTTCTTTCAACAAACATTGGTGGTGGAGCATTT 5530 ||| |||||||||||||||| || | || || |||||||||| ||| || ||| Sbjct 276 ACACTGTTTGACCGTCAACAGATGAGCTTGGTTGTCACCAACATTGGTGCTGGTGCGTTT 217 Query 5531 GAAACTGACACTACTAAAGTACGTGTTATTGACCGTTTTGATGTAGTAGCAACTGATACA 5590 || ||| ||||| | ||||| || ||||| || ||||| |||||||||| | Sbjct 216 GAGCATGATCAGACTAAGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGCT 157 Query 5591 GAAGCATTTGTGCCAGCATCATTTAAAGCTATTGCTGACCA 5631 || || |||||| | | ||| || || ||||||||||| Sbjct 156 GATGCCTTTGTGGCTGGATCGTTCTCCGCAATTGCTGACCA 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111146970887584