Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq249645 134 1e-26 >seq249645 Length=476466 Score = 134 bits (148), Expect = 1e-26 Identities = 278/408 (68%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 53664 GTTGATCTGAATACCGTAGTCGATACGGCGTTCGCGGTTTTCTTCAGTGCCACGGTTATT 53723 ||| | ||| | |||||||| ||| | || | ||||| |||||| || |||||||| Sbjct 264957 GTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATT 264898 Query 53724 CTTCAGTAC----AACGACGTCATCGAACTGGTAA-TGCCACAGAGGGATGTACGCTGTC 53778 || ||||| || ||| || |||| ||| ||||| || ||| | || ||| Sbjct 264897 TTTGAGTACCAGTAATGAC----TC-AACTTCTAAATGCCATAGTGGGTAGAACAACGTC 264843 Query 53779 GCCGCACCACCACGAATGCCGCCCTGGGAGCAAGACTTGAGCGCCCCAGTGAGATACTTG 53838 || ||||| ||||| | ||| || || ||||| | || | || || || | | || Sbjct 264842 GCAGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAA-CGGCCGTTTGGAACAATTT 264784 Query 53839 ATGAATGGGATCAG-GCCTGTGTGAACCATCTCTCCGCCGCGAATAGGACTGCCAATCCC 53897 || || ||| | ||| || || || ||||| || ||||| || |||| | Sbjct 264783 ATAAAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGC 264724 Query 53898 ACGGATAGCCCCGACGTCAAAGCCGATACCCGCACGTTTGGACACATAGTCAACGATGGT 53957 ||||||| || ||| | ||||||||| ||||| | ||||||||| ||||||| Sbjct 264723 ACGGATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGC 264664 Query 53958 CTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTTTTGATCAGGACACAGGAACT 54017 | | || |||||||||||||| | | | |||||| || ||| | ||| || || || Sbjct 264663 GCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCT 264604 Query 54018 GAACTGACGGGTAGGAGTACGAACACCTGCCATAATCGGGGTGGGAAG 54065 |||||||| | || ||||| ||||||| ||| || || || || || Sbjct 264603 AAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAG 264556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503802682470080