Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq26661 111 2e-19 seq210337 104 3e-17 seq153189 98.7 1e-15 seq54724 98.7 1e-15 seq26664 96.9 4e-15 seq214945 89.7 6e-13 seq78792 84.2 2e-11 seq236154 82.4 9e-11 seq117562 82.4 9e-11 >seq26661 Length=2801 Score = 111 bits (122), Expect = 2e-19 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || |||||||||||| |||||||||| |||||| || | Sbjct 1845 ACGCAACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGACC 1786 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || || ||||| |||||||| ||||| | ||||||||| | || | | ||||| Sbjct 1785 GTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCCTT 1726 Query 46498 GTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| ||| || | ||| || | | | ||||| |||| || || || | | Sbjct 1725 GTCCTGGAT-TTTTGCTTTCACGTTATCAATGGTGTCTGAGCTC---TCGACCTCGAGGG 1670 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || |||||||||| || || |||||||| ||||| Sbjct 1669 TAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 1365 CTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAA 1306 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 1305 GATCAACCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 1246 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| || || || | || || || |||||||||| || || Sbjct 1245 GTCAATGGTGTCAGAACTC---TCAACCTCGAGGGTAATCGTCTTGCCCGTCAAAGTCTT 1189 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 1188 GACGAAGATCTGCAT 1174 >seq210337 Length=1863 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | |||| |||||| ||||| |||||||| | || ||||| | Sbjct 825 ACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGTCC 884 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| ||||| || || | | ||||||||| | || | | ||| || Sbjct 885 ATCTTCTAACTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATTCCCTCTTT 944 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| |||||| |||| | | | ||||| |||| ||||| |||| || Sbjct 945 GTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAGCTC---TCCACCTCCAAAGT 1001 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || || || || || |||||||| ||||| Sbjct 1002 GATGGTTTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 1040 >seq153189 Length=17048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| ||||||| ||||| || ||||||||| || ||||| || | || ||||| | Sbjct 14724 ACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACC 14665 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||| || || ||||| || | ||||||||||| | || | | ||||| Sbjct 14664 ATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTT 14605 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||||| ||| | | | ||||| |||| ||||| || | | Sbjct 14604 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC---TCCACCTCGAGGG 14549 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || || |||| ||||| || ||||| ||||| Sbjct 14548 TAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| ||||||| ||||| || ||||||||| || ||||| || | || ||||| | Sbjct 14952 ACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACC 14893 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||| || || ||||| || | ||||||||||| | || | | ||||| Sbjct 14892 ATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTT 14833 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||||| ||| | | | ||||| |||| || || || | | Sbjct 14832 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCAAGGG 14777 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| || || || || || || || ||||| Sbjct 14776 TGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || |||||| || || |||||||||| | ||||| | Sbjct 14496 ACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGTCC 14437 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||| |||||||| ||||| | |||||| || | || | | ||||| Sbjct 14436 ATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTT 14377 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||| | | | | | | |||||| ||| |||||| || | | Sbjct 14376 GTCCTGGATCTT-GGCTTTAACATTGTCGATCGTGTCCGAGCT---TTCCACCTCGAGGG 14321 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || || || || ||||| ||||| ||||| Sbjct 14320 TGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281 >seq54724 Length=7877 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | ||| ||| || || ||||||||||||| ||||| | | Sbjct 2090 ACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCC 2031 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||| ||||| ||||| || ||||| | ||||||||| | || | | || || Sbjct 2030 GTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTT 1971 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||| ||| | | | ||||| |||| || || || | | Sbjct 1970 GTCCTGGATCTT-GGCTTTCACGTTGTCGATGGTGTCTGAGCTC---TCAACCTCGAGGG 1915 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||||||| || |||| || || |||||||| ||||| Sbjct 1914 TAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| || |||| || || ||||| |||||||| Sbjct 1838 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCAAGTTGCTTTCCGGCGAA 1779 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || || | |||||| || | || | | ||||| || |||||| ||||| ||| Sbjct 1778 GATTAATCTCTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATCTTAGCCTTGA-CGT 1720 Query 46522 CGCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| || || || | || || ||||| || |||| || | Sbjct 1719 TGTCGATGGTGTCAGAACTC---TCAACCTCGAGGGTAATAGTTTTACCAGTCAAGGTCT 1663 Query 46578 TAACAAAGATTTGCAT 46593 |||||||||| ||||| Sbjct 1662 TAACAAAGATCTGCAT 1647 >seq26664 Length=6282 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| ||||| || |||| ||||| || || || ||||| Sbjct 5682 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAAG 5741 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| ||||||| |||| | Sbjct 5742 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTG 5801 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| ||||| || || | || || || || || || || ||||| || Sbjct 5802 TCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACG 5861 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 5862 AAGATCTGCAT 5872 >seq214945 Length=15579 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | ||| ||||||||||||||||| |||| | ||| || | Sbjct 7774 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCGGCCAAAGTACGGCC 7833 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||| || ||||| || |||| || || | ||| | || || | || || Sbjct 7834 GTCCTCGAGCTGTTTACCGGCAAAGATCAGGCTTTGTTTGTCAGAAGGGACTCCTTCTTT 7893 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 || |||||| ||||| | | || ||||| ||| ||| || || | | Sbjct 7894 CTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCCGAGCT---TTCGACCTCGAGGGA 7950 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || || || || || ||||||||||| Sbjct 7951 TATGGTCTTGCCTGTAAGAGTCTTTACGAAGATTTGCAT 7989 >seq78792 Length=14290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||||||| |||| || | ||| | || ||||| ||||| ||||| |||| Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || | || || ||||| || ||||| || |||||||| | || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||||| || | | | | ||||| ||||| || Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 11490 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 || | || || || || ||||| || ||||| || ||||| ||||||| Sbjct 11489 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTT 11441 >seq236154 Length=204 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||||||||||| || | ||| ||||| ||||| ||||||||||| Sbjct 35 CCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAA 94 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||| |||| || || ||||| ||||| || ||||| || || ||||| Sbjct 95 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTC 147 >seq117562 Length=2070 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||| ||||| | |||| |||||| ||||| ||||| || | Sbjct 1457 CCACCTCTGAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAATCCGCC 1398 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || |||||||| |||||||| || | | ||||| || | || Sbjct 1397 AGAGTCCTTCCGTCTTCAAGCTGCTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1338 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||||||||| |||||| |||| | | | || || ||| ||| Sbjct 1337 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATAGTATCTGAGCT---TTCG 1281 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || ||||| || || |||| || || || ||||||||||| Sbjct 1280 ACTTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563350305910560