Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq153189 102 6e-17 seq78792 95.1 8e-15 seq117562 93.3 3e-14 seq54724 89.7 4e-13 seq26661 89.7 4e-13 seq210337 87.8 1e-12 >seq153189 Length=17048 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || || || || || || || |||||| Sbjct 14507 CCACCACGAAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCC 14448 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| |||| |||||||| || ||| | || || || | ||||||||||| || Sbjct 14447 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 14388 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || |||| || |||| | ||||| | |||||||| Sbjct 14387 ATACCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCG--ATCGTGTCCGAGCTTTCCA 14330 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || ||||| || || || | ||| || |||||||||||||| Sbjct 14329 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | ||||| |||||||| || ||||| || || ||||| || Sbjct 14735 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14676 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| || | || || | ||||||||| |||| || Sbjct 14675 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14616 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || || | ||| | | || |||||| ||| ||||| Sbjct 14615 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCTCTCCAC 14557 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 14556 CTCGAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 >seq78792 Length=14290 Score = 95.1 bits (104), Expect = 8e-15 Identities = 167/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||||| || ||||| | || ||| || || || || |||||||| Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || ||||||||||| ||| |||| || ||||| ||||| |||| || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || | | || |||| | |||||| | ||| | Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCG--ATTGTGTCCGAAGATTCAA 11492 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 | || | || ||||| || ||||||| ||||| |||||||||||||| || | ||||| Sbjct 11491 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTC-TCTGTTT 11433 >seq117562 Length=2070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| ||||||||||| | ||| ||||| || ||||| || || || Sbjct 1914 GCCACCACGAAGACGAAGTACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGC 1855 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || |||| |||| || | ||| || ||| |||| || | | ||||||||||| || Sbjct 1854 TAAGGTGCGTCCATCTTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGG 1795 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | ||||| ||||| | | | || | || | || || || ||||| | ||| || Sbjct 1794 GATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATA--GTGTCCGAGCTCTC 1738 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||| || || || || ||||| || || ||||| ||||| Sbjct 1737 AACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 1687 >seq54724 Length=7877 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| ||||| || ||||| || |||||| Sbjct 2101 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCC 2042 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || || | ||| || ||| |||| || || | |||||| |||| || Sbjct 2041 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 1982 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| || || ||| | ||| | | | ||||||| ||| || || Sbjct 1981 ATACCTTCTTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCTGAGCTCTCAAC 1923 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| |||||||| || || || || || ||||||||||| Sbjct 1922 CTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 >seq26661 Length=2801 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| || || ||||| ||||| || |||| |||||||| || || |||| Sbjct 1137 TTCCTTTTGGATGTTGTAATCCGCCAAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAA 1078 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | | ||||||||||| || | ||||| ||||| || ||| |||| ||| Sbjct 1077 GATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTTTGCCTTAA-CGT 1019 Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | | ||||| | |||||||| || | || || || || || || | |||||| | Sbjct 1018 TGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCA 959 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 958 CGAAGATCTGCAT 946 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| |||| ||| ||| || || || ||||| |||||| Sbjct 2084 CCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCC 2025 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | || || || | || || | ||||||||| |||| || Sbjct 2024 AGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1965 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| | | | || | || ||| | | | ||||||| ||| ||||| Sbjct 1964 ATACCTTCTTTGTC-CTGAATCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCCAC 1906 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || ||||| || || || || |||||||| ||||| Sbjct 1905 CTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || || ||||| || | || || | ||| || ||| | || Sbjct 1592 TCCTTCTGAATGTTGTAGTCCGCCAAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAG 1533 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||||||||||| || | ||||| ||||| || || ||| | ||| Sbjct 1532 ATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTT 1474 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | |||||||| |||||| || ||||||||||| || || ||||| || || || || Sbjct 1473 GTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGAC 1414 Query 39708 GAAGATCTGCAT 39719 ||||||||||| Sbjct 1413 AAAGATCTGCAT 1402 >seq210337 Length=1863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| |||||| || ||||| ||||| ||| Sbjct 358 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCC 417 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | ||||| || | || || | | ||| || |||| || Sbjct 418 AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 477 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||||||||| | | |||| | || | || || || ||||| | ||| || Sbjct 478 ATCCCTTCTTTGTC-CTGAATTTTAGCCTTCACATTATCAATA--GTGTCCGAGCTCTCA 534 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||| || || || || ||||| || || ||||| ||||| Sbjct 535 ACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346238272357724