Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq153189 102 6e-17
seq78792 95.1 8e-15
seq117562 93.3 3e-14
seq54724 89.7 4e-13
seq26661 89.7 4e-13
seq210337 87.8 1e-12
>seq153189
Length=17048
Score = 102 bits (112), Expect = 6e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| ||||| || | || || || || || || || ||||||
Sbjct 14507 CCACCACGAAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCC 14448
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| |||| |||| |||||||| || ||| | || || || | ||||||||||| ||
Sbjct 14447 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 14388
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| || || |||| || |||| | ||||| | ||||||||
Sbjct 14387 ATACCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCG--ATCGTGTCCGAGCTTTCCA 14330
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | || ||||| || || || | ||| || ||||||||||||||
Sbjct 14329 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| | ||||| |||||||| || ||||| || || ||||| ||
Sbjct 14735 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14676
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| ||| |||| || | ||||| || | || || | ||||||||| |||| ||
Sbjct 14675 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14616
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671
| ||||| ||||| || || || | ||| | | || |||||| ||| |||||
Sbjct 14615 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCTCTCCAC 14557
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||||| || ||||| || || ||||| ||||||||||||||
Sbjct 14556 CTCGAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509
>seq78792
Length=14290
Score = 95.1 bits (104), Expect = 8e-15
Identities = 167/240 (70%), Gaps = 5/240 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| || ||||| || ||||| | || ||| || || || || ||||||||
Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | || ||||||||||| ||| |||| || ||||| ||||| |||| ||
Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| | || || | | || |||| | |||||| | ||| |
Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCG--ATTGTGTCCGAAGATTCAA 11492
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730
| || | || ||||| || ||||||| ||||| |||||||||||||| || | |||||
Sbjct 11491 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTC-TCTGTTT 11433
>seq117562
Length=2070
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| ||||||||||| | ||| ||||| || ||||| || || ||
Sbjct 1914 GCCACCACGAAGACGAAGTACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGC 1855
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| |||| |||| || | ||| || ||| |||| || | | ||||||||||| ||
Sbjct 1854 TAAGGTGCGTCCATCTTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGG 1795
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTC 39668
| ||||| ||||| | | | || | || | || || || ||||| | ||| ||
Sbjct 1794 GATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATA--GTGTCCGAGCTCTC 1738
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| ||||| ||||| || || || || ||||| || || ||||| |||||
Sbjct 1737 AACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 1687
>seq54724
Length=7877
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| ||||| || | ||| ||||| || ||||| || ||||||
Sbjct 2101 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCC 2042
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | || || | ||| || ||| |||| || || | |||||| |||| ||
Sbjct 2041 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 1982
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| ||||||||||| || || ||| | ||| | | | ||||||| ||| || ||
Sbjct 1981 ATACCTTCTTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCTGAGCTCTCAAC 1923
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||||| |||||||| || || || || || |||||||||||
Sbjct 1922 CTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875
>seq26661
Length=2801
Score = 89.7 bits (98), Expect = 4e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| ||||| || || ||||| ||||| || |||| |||||||| || || ||||
Sbjct 1137 TTCCTTTTGGATGTTGTAATCCGCCAAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAA 1078
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
|| | | ||||||||||| || | ||||| ||||| || ||| |||| |||
Sbjct 1077 GATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTTTGCCTTAA-CGT 1019
Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706
| | | ||||| | |||||||| || | || || || || || || | |||||| |
Sbjct 1018 TGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCA 959
Query 39707 CGAAGATCTGCAT 39719
|||||||||||||
Sbjct 958 CGAAGATCTGCAT 946
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| ||||| |||| ||| ||| || || || ||||| ||||||
Sbjct 2084 CCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCC 2025
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || |||| || | || || || | || || | ||||||||| |||| ||
Sbjct 2024 AGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1965
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| ||||||||||| | | | || | || ||| | | | ||||||| ||| |||||
Sbjct 1964 ATACCTTCTTTGTC-CTGAATCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCCAC 1906
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||||| || ||||| || || || || |||||||| |||||
Sbjct 1905 CTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1858
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| || || || || || || ||||| || | || || | ||| || ||| | ||
Sbjct 1592 TCCTTCTGAATGTTGTAGTCCGCCAAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAG 1533
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| || | ||||||||||| || | ||||| ||||| || || ||| | |||
Sbjct 1532 ATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTT 1474
Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | | |||||||| |||||| || ||||||||||| || || ||||| || || || ||
Sbjct 1473 GTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGAC 1414
Query 39708 GAAGATCTGCAT 39719
|||||||||||
Sbjct 1413 AAAGATCTGCAT 1402
>seq210337
Length=1863
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | ||| |||||| || ||||| ||||| |||
Sbjct 358 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCC 417
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || |||| || | ||||| || | || || | | ||| || |||| ||
Sbjct 418 AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 477
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| ||||||||||| | | |||| | || | || || || ||||| | ||| ||
Sbjct 478 ATCCCTTCTTTGTC-CTGAATTTTAGCCTTCACATTATCAATA--GTGTCCGAGCTCTCA 534
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| ||||| ||||| || || || || ||||| || || ||||| |||||
Sbjct 535 ACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346238272357724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |