Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_014036.1
Length=174436
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 215 6e-51
seq249645 179 4e-40
seq244327 111 2e-19
seq76715 87.8 2e-12
>seq26767
Length=1149
Score = 215 bits (238), Expect = 6e-51
Identities = 322/457 (70%), Gaps = 0/457 (0%)
Strand=Plus/Minus
Query 41060 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 41119
||||||||| || ||||| | |||| | ||| ||||||| ||||||||| | || ||
Sbjct 477 TTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGT 418
Query 41120 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 41179
| |||||||| || || || | ||||| ||||||||| | |||| ||| |
Sbjct 417 TAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGA 358
Query 41180 TTCTCTTAACGCTGTAACCTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGG 41239
|||| |||||||| || | | || || || ||| |||| ||||| || || |||||
Sbjct 357 TTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGG 298
Query 41240 GGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCA 41299
|||| || ||| | ||||| ||| | ||| | || | ||| ||||| ||||
Sbjct 297 TATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCA 238
Query 41300 TACTGGTGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGG 41359
||||||| |||||||| | |||||| | |||| ||||| ||||||||||| || ||
Sbjct 237 TACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGG 178
Query 41360 TGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAA 41419
|| ||| | ||||| || ||||| | | |||||| | |||||| | ||| ||||||
Sbjct 177 AGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAG 118
Query 41420 CCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTA 41479
| | || || || || || | ||| | |||||||| | || ||||| |||||||
Sbjct 117 TTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTA 58
Query 41480 CGGTGTACAGCTTAACCAGTTGATGTATAAACGCTTA 41516
| ||||| |||| | ||||||||| || | |||
Sbjct 57 TGCAGTACAAATTAATAAATTGATGTATCAAAGATTA 21
>seq249645
Length=476466
Score = 179 bits (198), Expect = 4e-40
Identities = 320/463 (69%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 41084 CAAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTC 41143
|||| | || ||||| || ||||| ||| | ||||| ||||| || |||| |||||
Sbjct 264546 CAAAATCTCACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAG 264605
Query 41144 CAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT-- 41201
| || || |||| |||| |||||| | | ||| | ||||| ||| ||
Sbjct 264606 CTCGTGCGTCTTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCC---ACCACTAG 264662
Query 41202 -GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCG 41260
|| ||||| ||| | ||||| ||||||||||| || | ||||| || | ||| ||
Sbjct 264663 CGCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCG 264722
Query 41261 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCT 41319
|| | ||| |||||||| |||||||| |||||||| ||| |||||||| |
Sbjct 264723 TGCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGT-ATTCCTTTTT 264781
Query 41320 GGAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTG 41379
||| ||||||| || ||||||| ||| ||||| |||||||| ||||| |||||||
Sbjct 264782 ATAAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTG 264841
Query 41380 CAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACA 41439
| || ||| || || | |||||| | |||||||| | ||||| | || || |
Sbjct 264842 CGACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATA 264901
Query 41440 ACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGT 41499
|| || || ||||| ||||| || |||||| | || ||||| |||||| | ||| |
Sbjct 264902 ACCGCGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAA 264961
Query 41500 TGATGTATAAACGCTTAATGAATCGTGATTACATTACGCTGTT 41542
|||||| | ||| | || || || | |||| |||| ||
Sbjct 264962 CGATGTACACGCGCCTCATCAAAGGTCAAGACATCTCGCTATT 265004
Score = 86.0 bits (94), Expect = 7e-12
Identities = 125/174 (72%), Gaps = 7/174 (4%)
Strand=Plus/Plus
Query 43375 AAGAAGC-GCTGTACCTGTGTATGCACGCTGTGAACGCTCTGGAAGCGATCCGTTTCTAT 43433
|| |||| | |||| ||||| || || || |||| || ||||| || |||||||||
Sbjct 268755 AAAAAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTAT 268814
Query 43434 GTGTCGTTTAGTTTCACCTTTAACTTTGCTGAACAGGGCAA---GATGGAAGGCAACGCT 43490
|| |||||| || | | ||| ||||||| || |||| ||||||||| || ||
Sbjct 268815 GTCTCGTTTGCTTGCTCGTTTGCGTTTGCTG---AGCGCAAATTGATGGAAGGTAATGCC 268871
Query 43491 AAAATTATGCGCCTGATTGCGCGTGATGAAGCATTGCATCAGAAAGGTACTCAG 43544
||||| || || || || ||||||||||| ||||| || |||||| |||
Sbjct 268872 AAAATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAG 268925
>seq244327
Length=1302
Score = 111 bits (122), Expect = 2e-19
Identities = 226/333 (68%), Gaps = 2/333 (1%)
Strand=Plus/Minus
Query 42814 AACCTATGTTTTTTGGTGAAGATACTGGTGTTGCACGTTATGAATCGCAGAAACACAAAG 42873
|||||||||||||||| || | | |||| || ||||| ||| ||| | ||
Sbjct 1179 AACCTATGTTTTTTGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAATA 1120
Query 42874 TTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42933
|||| |||| | | |||||||||| ||||| || ||| | || |||||| | ||||
Sbjct 1119 TTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGATC 1060
Query 42934 TGTCTACTGACCGTATGCAGTATGCAAAACTT-CCTGAACATGAAAAAATCATTTTCGAT 42992
| ||| || | || | | | ||||| || ||||||||||||||| ||||| |
Sbjct 1059 TCTCTCGAGATAGAATAGATTTT-CAAAATTTACCTGAACATGAAAAACATATTTTTCTT 1001
Query 42993 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 43052
||| || | |||||||| | ||||| | ||||| ||| | | |||||| | ||
Sbjct 1000 AGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCT 941
Query 43053 TTTTTGCCAATTGCATCCGATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGT 43112
||| | |||||| || | | | ||||||||||| ||||| ||| | |||
Sbjct 940 TTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCG 881
Query 43113 GAAACCATCCACAGCCGTAGTTACACGCATATT 43145
||||| || ||| ||| ||| || ||||||
Sbjct 880 GAAACTATTCACTCACGTTCTTATACTCATATT 848
>seq76715
Length=41281
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 51227 GGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTTGAACAT 51286
||||| ||||||||||| || || || ||||||||| || || |||||| | ||||||
Sbjct 9079 GGACACCATTTAAACGTCAATGTCTTTGACCGCGAAACCCTGCTCGATGCGATGGAACAT 9020
Query 51287 CCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTTAACTCA 51346
|| ||| || ||||| | || ||||||||||| ||||| || || || | | |
Sbjct 9019 CCGGAACTCTATCCACAACTGACAATCCGTGTTTCCGGTTACGCCGTCAACTTCATCAAA 8960
Query 51347 CTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTT 51387
|||| | |||||| || ||| || ||| ||| || ||
Sbjct 8959 TTGACGCGTGAACAACAGATCGATGTCATCAACCGGACATT 8919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556203060228480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |