Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq26767 215 6e-51 seq249645 179 4e-40 seq244327 111 2e-19 seq76715 87.8 2e-12 >seq26767 Length=1149 Score = 215 bits (238), Expect = 6e-51 Identities = 322/457 (70%), Gaps = 0/457 (0%) Strand=Plus/Minus Query 41060 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 41119 ||||||||| || ||||| | |||| | ||| ||||||| ||||||||| | || || Sbjct 477 TTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGT 418 Query 41120 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 41179 | |||||||| || || || | ||||| ||||||||| | |||| ||| | Sbjct 417 TAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGA 358 Query 41180 TTCTCTTAACGCTGTAACCTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGG 41239 |||| |||||||| || | | || || || ||| |||| ||||| || || ||||| Sbjct 357 TTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGG 298 Query 41240 GGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCA 41299 |||| || ||| | ||||| ||| | ||| | || | ||| ||||| |||| Sbjct 297 TATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCA 238 Query 41300 TACTGGTGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGG 41359 ||||||| |||||||| | |||||| | |||| ||||| ||||||||||| || || Sbjct 237 TACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGG 178 Query 41360 TGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAA 41419 || ||| | ||||| || ||||| | | |||||| | |||||| | ||| |||||| Sbjct 177 AGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAG 118 Query 41420 CCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTA 41479 | | || || || || || | ||| | |||||||| | || ||||| ||||||| Sbjct 117 TTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTA 58 Query 41480 CGGTGTACAGCTTAACCAGTTGATGTATAAACGCTTA 41516 | ||||| |||| | ||||||||| || | ||| Sbjct 57 TGCAGTACAAATTAATAAATTGATGTATCAAAGATTA 21 >seq249645 Length=476466 Score = 179 bits (198), Expect = 4e-40 Identities = 320/463 (69%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 41084 CAAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTC 41143 |||| | || ||||| || ||||| ||| | ||||| ||||| || |||| ||||| Sbjct 264546 CAAAATCTCACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAG 264605 Query 41144 CAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT-- 41201 | || || |||| |||| |||||| | | ||| | ||||| ||| || Sbjct 264606 CTCGTGCGTCTTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCC---ACCACTAG 264662 Query 41202 -GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCG 41260 || ||||| ||| | ||||| ||||||||||| || | ||||| || | ||| || Sbjct 264663 CGCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCG 264722 Query 41261 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCT 41319 || | ||| |||||||| |||||||| |||||||| ||| |||||||| | Sbjct 264723 TGCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGT-ATTCCTTTTT 264781 Query 41320 GGAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTG 41379 ||| ||||||| || ||||||| ||| ||||| |||||||| ||||| ||||||| Sbjct 264782 ATAAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTG 264841 Query 41380 CAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACA 41439 | || ||| || || | |||||| | |||||||| | ||||| | || || | Sbjct 264842 CGACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATA 264901 Query 41440 ACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGT 41499 || || || ||||| ||||| || |||||| | || ||||| |||||| | ||| | Sbjct 264902 ACCGCGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAA 264961 Query 41500 TGATGTATAAACGCTTAATGAATCGTGATTACATTACGCTGTT 41542 |||||| | ||| | || || || | |||| |||| || Sbjct 264962 CGATGTACACGCGCCTCATCAAAGGTCAAGACATCTCGCTATT 265004 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/174 (72%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 43375 AAGAAGC-GCTGTACCTGTGTATGCACGCTGTGAACGCTCTGGAAGCGATCCGTTTCTAT 43433 || |||| | |||| ||||| || || || |||| || ||||| || ||||||||| Sbjct 268755 AAAAAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTAT 268814 Query 43434 GTGTCGTTTAGTTTCACCTTTAACTTTGCTGAACAGGGCAA---GATGGAAGGCAACGCT 43490 || |||||| || | | ||| ||||||| || |||| ||||||||| || || Sbjct 268815 GTCTCGTTTGCTTGCTCGTTTGCGTTTGCTG---AGCGCAAATTGATGGAAGGTAATGCC 268871 Query 43491 AAAATTATGCGCCTGATTGCGCGTGATGAAGCATTGCATCAGAAAGGTACTCAG 43544 ||||| || || || || ||||||||||| ||||| || |||||| ||| Sbjct 268872 AAAATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAG 268925 >seq244327 Length=1302 Score = 111 bits (122), Expect = 2e-19 Identities = 226/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 42814 AACCTATGTTTTTTGGTGAAGATACTGGTGTTGCACGTTATGAATCGCAGAAACACAAAG 42873 |||||||||||||||| || | | |||| || ||||| ||| ||| | || Sbjct 1179 AACCTATGTTTTTTGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAATA 1120 Query 42874 TTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42933 |||| |||| | | |||||||||| ||||| || ||| | || |||||| | |||| Sbjct 1119 TTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGATC 1060 Query 42934 TGTCTACTGACCGTATGCAGTATGCAAAACTT-CCTGAACATGAAAAAATCATTTTCGAT 42992 | ||| || | || | | | ||||| || ||||||||||||||| ||||| | Sbjct 1059 TCTCTCGAGATAGAATAGATTTT-CAAAATTTACCTGAACATGAAAAACATATTTTTCTT 1001 Query 42993 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 43052 ||| || | |||||||| | ||||| | ||||| ||| | | |||||| | || Sbjct 1000 AGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCT 941 Query 43053 TTTTTGCCAATTGCATCCGATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGT 43112 ||| | |||||| || | | | ||||||||||| ||||| ||| | ||| Sbjct 940 TTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCG 881 Query 43113 GAAACCATCCACAGCCGTAGTTACACGCATATT 43145 ||||| || ||| ||| ||| || |||||| Sbjct 880 GAAACTATTCACTCACGTTCTTATACTCATATT 848 >seq76715 Length=41281 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51227 GGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTTGAACAT 51286 ||||| ||||||||||| || || || ||||||||| || || |||||| | |||||| Sbjct 9079 GGACACCATTTAAACGTCAATGTCTTTGACCGCGAAACCCTGCTCGATGCGATGGAACAT 9020 Query 51287 CCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTTAACTCA 51346 || ||| || ||||| | || ||||||||||| ||||| || || || | | | Sbjct 9019 CCGGAACTCTATCCACAACTGACAATCCGTGTTTCCGGTTACGCCGTCAACTTCATCAAA 8960 Query 51347 CTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTT 51387 |||| | |||||| || ||| || ||| ||| || || Sbjct 8959 TTGACGCGTGAACAACAGATCGATGTCATCAACCGGACATT 8919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556203060228480