Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq249645 170 3e-37 seq117240 95.1 2e-14 >seq249645 Length=476466 Score = 170 bits (188), Expect = 3e-37 Identities = 271/389 (70%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 129079 CCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGCCCTTGTTATTCTTGAGCACAAGG 129138 |||||||| | ||| |||| ||||| |||||||| || |||||| ||||| || || Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885 Query 129139 ATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATAGAGTTGCGGCACCGCCGCGAACA 129198 | | |||||||| | ||||| | |||||| | | || || |||||||| || || Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825 Query 129199 CCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGTATTTCCAAAATGGGATAATACCG 129258 ||||| ||||| |||| || || || || ||||| |||| |||| || ||| || Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765 Query 129259 GTATGTCGCACTTCACCGCTACGAATGCGAGATCCCTCGGCACGAATCGCACCGCCGTTG 129318 ||||| | ||||||||| ||| || | || |||||| || ||| ||||| Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTG 264705 Query 129319 ATGCCGATACCAGCGCGTTTGCTGATATAGTCAACGATAGAACTAGCGGTAGCGTTGATG 129378 |||||||||||||| || | | |||| ||||| | |||| ||| |||||||| Sbjct 264704 ATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGTTGATA 264645 Query 129379 CTATCCAGTTCGTCTCCACATTCGATCTTGACACAAGAGCTAAACTGCCGAGTCGGGGTG 129438 || | || ||||||||||| ||| || ||||||||||| || | || || Sbjct 264644 GAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGATGGCGTA 264585 Query 129439 CGAACACCTGCGAGAATCGGAGTTGGCAG 129467 || ||||||| | || || ||||| || Sbjct 264584 CGCACACCTGACATGATTGGCGTTGGTAG 264556 Score = 111 bits (122), Expect = 2e-19 Identities = 219/320 (68%), Gaps = 7/320 (2%) Strand=Plus/Minus Query 127991 ACGGGA-CGTAATAAGTGTTTGCACTGATCATCTGATCCACAAACTTCTGCATGATAGCG 128049 |||||| |||| | ||| || ||| ||| | ||||| || || || |||||||||||| Sbjct 266042 ACGGGATCGTAGTTAGTATTGGCAGAGATACTTTGATCGACGAATTTTTGCATGATAGCG 265983 Query 128050 ACAATATCGAGGTAACCCTTCATGCCACGTTTAGCCATCGCCCAAGCGGTTTCATACTCG 128109 || | | |||||||| | ||| ||| || | ||| || | | | |||| Sbjct 265982 ACCAGCTTTAGGTAACCGT-CATT----GTTCGGCATTTGCCATAGTAGCT-CGTACTGA 265929 Query 128110 CTACCAAGCATTTCTACCTCTGGCACTAGCTGATTAAACACACCATCTTTCGATTGCTTG 128169 ||| | || | ||| ||||| | || || || | |||||||| ||| ||| Sbjct 265928 TCTTTTAGCTTGTCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTG 265869 Query 128170 GTGCTCACTAGGCCACGCGGTGGCTCGATACCGTTTGTGCTGTTGGTAATTTGGCTAGAA 128229 | || || ||||| ||||||||||||||||| || |||| || || || || Sbjct 265868 ATAGAGACCAGACCACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGAG 265809 Query 128230 CTTTCACACGGCATAAACGCGCTCAGTGTGTCATTGCGCATACCGTACTTTTTAATCTCG 128289 ||||| ||||||| || ||| | || || ||||||| ||||| || | |||||| Sbjct 265808 GTTTCAGACGGCATCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGATCTCG 265749 Query 128290 CCACGTAGCCATTCCCAATC 128309 ||||||||| ||||||||| Sbjct 265748 CCACGTAGCGTTTCCCAATC 265729 >seq117240 Length=334284 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 191313 AAATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTT 191372 ||| |||| ||||||||||||||||||||| || ||| | | ||||||| | | |||||| Sbjct 324980 AAAATGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACCTGATGCCTT 325039 Query 191373 TCCAACTTGGCGATACCCCTAT 191394 |||||||||| |||||||||| Sbjct 325040 ACCAACTTGGCTATACCCCTAT 325061 Score = 93.3 bits (102), Expect = 6e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191313 AAATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTT 191372 ||| |||| ||||||||||||||||||||| || ||| | | ||||||| | | |||||| Sbjct 324665 AAAATGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACCTGATGCCTT 324724 Query 191373 TCCAACTTGGCGATACCCCTATAA 191396 |||||||||| |||||||| ||| Sbjct 324725 ACCAACTTGGCTATACCCCTGTAA 324748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718322110880640