Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_014661.1
Length=164093
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 149 7e-31
seq249645 114 1e-20
>seq26767
Length=1149
Score = 149 bits (164), Expect = 7e-31
Identities = 296/436 (68%), Gaps = 2/436 (0%)
Strand=Plus/Plus
Query 141455 ATTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTT 141514
||| ||||| | ||||||| | |||||| | | |||||||||| || | || ||
Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101
Query 141515 CTTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGA 141574
|| || || | || |||| | ||||| ||||| || || | || || |||||||
Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161
Query 141575 ACCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAA 141634
|| | || || |||||||||||| | | || || | ||| || || | ||
Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221
Query 141635 AGGTACTAC-GCCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAA 141693
||| | ||| ||||| || ||||||| | ||| |||| | || ||||
Sbjct 222 AGG-AATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAA 280
Query 141694 TCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAGT 141753
| | || || ||||| || || |||||||| | ||||||||| || ||||||| |
Sbjct 281 TTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAG 340
Query 141754 TTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATT 141813
| | | | || || || || || | ||| || ||||||| | |||||||| || ||||
Sbjct 341 TAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATT 400
Query 141814 GACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTTG 141873
| ||||| || || | ||| |||| ||||||||| || || || || ||||| |||||
Sbjct 401 GTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTG 460
Query 141874 AAACAGCTTCATAAAA 141889
||| || | ||||||
Sbjct 461 AAATGGCATTATAAAA 476
>seq249645
Length=476466
Score = 114 bits (126), Expect = 1e-20
Identities = 420/648 (65%), Gaps = 30/648 (5%)
Strand=Plus/Minus
Query 141467 GCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAACACAAT 141526
||| || ||||| ||||| | |||||| ||||||||||| ||| || || | || |
Sbjct 264945 GCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAG 264886
Query 141527 CAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTTACGAAT 141586
|| || ||||| | ||||| | ||| |||||| || || | ||| ||| |
Sbjct 264885 TAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTAC 264826
Query 141587 ACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTACTAC-GC 141645
|||||||| || ||||| | ||| || | | || || | ||||| | ||| ||
Sbjct 264825 GCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAA-TACAGC 264767
Query 141646 CAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCA---GCTCGAATCATGCCTG 141702
|||| || | |||| || |||| | | | || || || || ||||
Sbjct 264766 CAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGACCTG 264710
Query 141703 CGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGC---AGAGTTTGCAT 141759
|||| || |||||||| || |||| || ||||| || || || || | | || |
Sbjct 264709 CGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGT 264650
Query 141760 CATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAG 141819
|||| ||||| | ||| |||||| |||| || | || || || || || ||||| |
Sbjct 264649 ---TGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCG 264593
Query 141820 TTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTT--GAAAC 141877
||| ||||| ||||| | ||| ||||| || || | |||||||| || || ||
Sbjct 264592 ATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTTT--GAATTCTGAGGT 264535
Query 141878 AGCTTCATAAAATTCTTTGACTGCTTGTAGACGAGTTGATTTGTCTTCATCTTGATGCAA 141937
|| ||||| || |||||| || | ||| ||| ||||| | | | | ||
Sbjct 264534 CGCATCATAGAAGCGTTTGACATAATGCAAACGGTCTGACTTGTCATAACCAGCAAACAG 264475
Query 141938 ACACATACCGATGAGCATGAATGCAAATTGTGGAGTTTCATAAA---TCTTGCCAGTTGA 141994
|||||| || | ||||||| | || || || ||||| ||| ||||| ||
Sbjct 264474 ACACATGCCAACGAGCATGTACAAGAACTGCGGGCTTTCAAAAACCGTCTTG---GTCAC 264418
Query 141995 ACGATCTTTGACAAGATATTT---GTCCATTAACTGACAAGTGCCTGCATAGGTAAACGT 142051
||||||| ||||||||||| ||||| || | || | ||||| | || |
Sbjct 264417 GCGATCTTGTACAAGATATTTTCCTGCCATTTGCTCAACAG---CAGCATAAGCAAGGTT 264361
Query 142052 GAAGTCACGTGAATGGTCGATGGCTTCTTCGAGTTCTTCAAATTCCGC 142099
| || || |||| || | | ||||||||| || |||||||| ||
Sbjct 264360 CATATCGCGCCAATGATCAAGGTATTCTTCGAGCTCATCAAATTCAGC 264313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 523216017796640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |