Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq26767 149 7e-31 seq249645 114 1e-20 >seq26767 Length=1149 Score = 149 bits (164), Expect = 7e-31 Identities = 296/436 (68%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 141455 ATTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTT 141514 ||| ||||| | ||||||| | |||||| | | |||||||||| || | || || Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101 Query 141515 CTTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGA 141574 || || || | || |||| | ||||| ||||| || || | || || ||||||| Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161 Query 141575 ACCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAA 141634 || | || || |||||||||||| | | || || | ||| || || | || Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221 Query 141635 AGGTACTAC-GCCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAA 141693 ||| | ||| ||||| || ||||||| | ||| |||| | || |||| Sbjct 222 AGG-AATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAA 280 Query 141694 TCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAGT 141753 | | || || ||||| || || |||||||| | ||||||||| || ||||||| | Sbjct 281 TTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAG 340 Query 141754 TTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATT 141813 | | | | || || || || || | ||| || ||||||| | |||||||| || |||| Sbjct 341 TAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATT 400 Query 141814 GACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTTG 141873 | ||||| || || | ||| |||| ||||||||| || || || || ||||| ||||| Sbjct 401 GTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTG 460 Query 141874 AAACAGCTTCATAAAA 141889 ||| || | |||||| Sbjct 461 AAATGGCATTATAAAA 476 >seq249645 Length=476466 Score = 114 bits (126), Expect = 1e-20 Identities = 420/648 (65%), Gaps = 30/648 (5%) Strand=Plus/Minus Query 141467 GCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAACACAAT 141526 ||| || ||||| ||||| | |||||| ||||||||||| ||| || || | || | Sbjct 264945 GCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAG 264886 Query 141527 CAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTTACGAAT 141586 || || ||||| | ||||| | ||| |||||| || || | ||| ||| | Sbjct 264885 TAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTAC 264826 Query 141587 ACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTACTAC-GC 141645 |||||||| || ||||| | ||| || | | || || | ||||| | ||| || Sbjct 264825 GCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAA-TACAGC 264767 Query 141646 CAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCA---GCTCGAATCATGCCTG 141702 |||| || | |||| || |||| | | | || || || || |||| Sbjct 264766 CAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGACCTG 264710 Query 141703 CGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGC---AGAGTTTGCAT 141759 |||| || |||||||| || |||| || ||||| || || || || | | || | Sbjct 264709 CGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGT 264650 Query 141760 CATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAG 141819 |||| ||||| | ||| |||||| |||| || | || || || || || ||||| | Sbjct 264649 ---TGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCG 264593 Query 141820 TTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTT--GAAAC 141877 ||| ||||| ||||| | ||| ||||| || || | |||||||| || || || Sbjct 264592 ATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTTT--GAATTCTGAGGT 264535 Query 141878 AGCTTCATAAAATTCTTTGACTGCTTGTAGACGAGTTGATTTGTCTTCATCTTGATGCAA 141937 || ||||| || |||||| || | ||| ||| ||||| | | | | || Sbjct 264534 CGCATCATAGAAGCGTTTGACATAATGCAAACGGTCTGACTTGTCATAACCAGCAAACAG 264475 Query 141938 ACACATACCGATGAGCATGAATGCAAATTGTGGAGTTTCATAAA---TCTTGCCAGTTGA 141994 |||||| || | ||||||| | || || || ||||| ||| ||||| || Sbjct 264474 ACACATGCCAACGAGCATGTACAAGAACTGCGGGCTTTCAAAAACCGTCTTG---GTCAC 264418 Query 141995 ACGATCTTTGACAAGATATTT---GTCCATTAACTGACAAGTGCCTGCATAGGTAAACGT 142051 ||||||| ||||||||||| ||||| || | || | ||||| | || | Sbjct 264417 GCGATCTTGTACAAGATATTTTCCTGCCATTTGCTCAACAG---CAGCATAAGCAAGGTT 264361 Query 142052 GAAGTCACGTGAATGGTCGATGGCTTCTTCGAGTTCTTCAAATTCCGC 142099 | || || |||| || | | ||||||||| || |||||||| || Sbjct 264360 CATATCGCGCCAATGATCAAGGTATTCTTCGAGCTCATCAAATTCAGC 264313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523216017796640