Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_014662.1
Length=165540
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 163 3e-35
seq249645 143 3e-29
>seq26767
Length=1149
Score = 163 bits (180), Expect = 3e-35
Identities = 305/448 (68%), Gaps = 0/448 (0%)
Strand=Plus/Plus
Query 137890 ACATCAGGTCGTTGATTTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGC 137949
|||||| | || ||||| || ||||||| | |||||| | || ||||| || | ||
Sbjct 32 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 91
Query 137950 CTTTGTTGTTCTTAAGTACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACA 138009
| | || || || | || | | | |||| ||||| ||||| |||||||| | |
Sbjct 92 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 151
Query 138010 ATGTCGCCGCGCCACCACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGT 138069
|| ||||| ||||| | ||||| ||||| ||||| || || || || |||| | |
Sbjct 152 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 211
Query 138070 GTTTCCAGAAAGGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTT 138129
|||| | ||||||||| |||||||| |||| || | || ||||
Sbjct 212 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 271
Query 138130 CTGCACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAA 138189
|||||||||| | || || ||||| || || || || |||| ||| | || | |||||
Sbjct 272 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 331
Query 138190 TTGATTCAGCTGATTTGTTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAG 138249
| || || | |||||| || | || |||| || |||||| | ||| || |
Sbjct 332 TAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATG 391
Query 138250 AACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTT 138309
| || ||||| ||||||||||| | | | || | ||| ||||| || || | ||||||||
Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451
Query 138310 TCTTAGTTGACACAGCATCATAAAAACG 138337
| |||||| | |||| |||||||||
Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 143 bits (158), Expect = 3e-29
Identities = 274/404 (68%), Gaps = 0/404 (0%)
Strand=Plus/Minus
Query 137907 TGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGT 137966
|| || || || |||| ||||| | ||||| || || || || ||| || || |||
Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891
Query 137967 ACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCA 138026
|| || | ||||||||| | ||||| | ||| ||| |||| ||||| || || |||
Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831
Query 138027 CGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATA 138086
|| || || ||||| || || | ||||| || ||||||| ||| | |||||||||
Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771
Query 138087 ACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACCT 138146
|||||||||| |||| ||| | ||| ||| ||||| || ||||
Sbjct 264770 CAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCT 264711
Query 138147 GCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCTGATTTG 138206
||||| ||||||||||||||||| | || | || ||| || | || | |
Sbjct 264710 GCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCG 264651
Query 138207 TTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGTA 138266
|| || || | | ||||||| ||| || | ||||| || || || ||||| |
Sbjct 264650 TTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGAT 264591
Query 138267 GGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTT 138310
|| ||||| |||||| ||||||||| ||||| || || |||||
Sbjct 264590 GGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTTT 264547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 527830950640000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |