Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq26767 163 3e-35 seq249645 143 3e-29 >seq26767 Length=1149 Score = 163 bits (180), Expect = 3e-35 Identities = 305/448 (68%), Gaps = 0/448 (0%) Strand=Plus/Plus Query 137890 ACATCAGGTCGTTGATTTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGC 137949 |||||| | || ||||| || ||||||| | |||||| | || ||||| || | || Sbjct 32 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 91 Query 137950 CTTTGTTGTTCTTAAGTACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACA 138009 | | || || || | || | | | |||| ||||| ||||| |||||||| | | Sbjct 92 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 151 Query 138010 ATGTCGCCGCGCCACCACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGT 138069 || ||||| ||||| | ||||| ||||| ||||| || || || || |||| | | Sbjct 152 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 211 Query 138070 GTTTCCAGAAAGGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTT 138129 |||| | ||||||||| |||||||| |||| || | || |||| Sbjct 212 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 271 Query 138130 CTGCACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAA 138189 |||||||||| | || || ||||| || || || || |||| ||| | || | ||||| Sbjct 272 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 331 Query 138190 TTGATTCAGCTGATTTGTTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAG 138249 | || || | |||||| || | || |||| || |||||| | ||| || | Sbjct 332 TAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATG 391 Query 138250 AACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTT 138309 | || ||||| ||||||||||| | | | || | ||| ||||| || || | |||||||| Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451 Query 138310 TCTTAGTTGACACAGCATCATAAAAACG 138337 | |||||| | |||| ||||||||| Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 143 bits (158), Expect = 3e-29 Identities = 274/404 (68%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 137907 TGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGT 137966 || || || || |||| ||||| | ||||| || || || || ||| || || ||| Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 137967 ACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCA 138026 || || | ||||||||| | ||||| | ||| ||| |||| ||||| || || ||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 138027 CGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATA 138086 || || || ||||| || || | ||||| || ||||||| ||| | ||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 138087 ACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACCT 138146 |||||||||| |||| ||| | ||| ||| ||||| || |||| Sbjct 264770 CAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCT 264711 Query 138147 GCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCTGATTTG 138206 ||||| ||||||||||||||||| | || | || ||| || | || | | Sbjct 264710 GCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCG 264651 Query 138207 TTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGTA 138266 || || || | | ||||||| ||| || | ||||| || || || ||||| | Sbjct 264650 TTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGAT 264591 Query 138267 GGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTT 138310 || ||||| |||||| ||||||||| ||||| || || ||||| Sbjct 264590 GGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTTT 264547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527830950640000