Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq251147 152 6e-32
seq119666 132 6e-26
seq248505 129 7e-25
seq146431 122 1e-22
seq27195 122 1e-22
seq99228 120 4e-22
seq90345 91.5 2e-13
seq229172 86.0 8e-12
seq156032 82.4 9e-11
>seq251147
Length=238287
Score = 152 bits (168), Expect = 6e-32
Identities = 267/382 (70%), Gaps = 10/382 (3%)
Strand=Plus/Minus
Query 15873 ACTTGGATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACG 15932
||||| | | |||||| || ||||||||||| | ||||| | |||||| | || |
Sbjct 146665 ACTTGTACTTGACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCA 146606
Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCT 15989
|| || || || || |||| || || ||| |||||| |||||||| ||||||||
Sbjct 146605 CGGTTGGTCGCAGCAATGATAATAACGCCT---TCGTTACCTTCAAAACCGTCCATCTCA 146549
Query 15990 GTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GCATACCACCAGCACT 16048
||| | |||||| | |||||| || || |||||||| | || | |||| ||
Sbjct 146548 ACCAATAACTGGTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-CCAGAACC 146490
Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 16108
|| || || || |||||||||||||| ||||||| || || ||| | |||
Sbjct 146489 ACGATGACGACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTT 146430
Query 16109 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168
|| |||||| | ||| |||||||| || ||||||||||||||||| || || ||
Sbjct 146429 CGCCTGTTCAAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAA 146370
Query 16169 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227
| | | ||| || | | ||| || || || | |||||| |||||||||| ||| |
Sbjct 146369 ATCAGAACCTGAA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCA 146311
Query 16228 GAAGAGTCTTACCCGTACCTGG 16249
|| || ||||| ||||||||
Sbjct 146310 ATAGCGTTTTACCAGTACCTGG 146289
>seq119666
Length=8982
Score = 132 bits (146), Expect = 6e-26
Identities = 305/452 (67%), Gaps = 18/452 (4%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| || ||||| | || | ||| ||||| || || | | || |||||
Sbjct 2036 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2095
Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001
|| | || | || ||| || |||| ||||||||||||||||| ||||| |||||
Sbjct 2096 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAAGAGCTGA 2152
Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058
|||| ||| ||||| | ||||||||| || |||| || | | | |||| |
Sbjct 2153 TTAAGAGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTA 2209
Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118
|| || ||||| || ||||||| || || ||||| || |||||| || ||
Sbjct 2210 CCAACAGCATCTATTTCATCAACAAAAACAATGCAGGGCGCATTTTCCTTGGCTTTTTTG 2269
Query 16119 AAGAGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176
|| ||||| || ||| ||| ||| || ||||| || |||||||||||||| | |
Sbjct 2270 AAAAGATCACG--CACCCTTGAGGCACCAACACCGACGAACATCTCCACAAACTCAGAAC 2327
Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235
| | | || | | |||||| ||| | |||||| ||||||||| || | || ||
Sbjct 2328 CCG-AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGGGTT 2386
Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295
||||| ||||| || ||| ||||| ||||| || ||| ||| ||| ||
Sbjct 2387 TTACCAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATCCGGGCACCAACCGCA 2446
Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327
| |||||||||| | ||| ||||| |||||
Sbjct 2447 GTGAATCTCTCAGGCTTCTTCAGAAACTCCAC 2478
>seq248505
Length=7796
Score = 129 bits (142), Expect = 7e-25
Identities = 277/408 (68%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937
||| | ||| ||||| |||||||| || || | || || | |||||| | || ||
Sbjct 4764 GATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCACGGTT 4823
Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCA---AAACCATCCATCTCTGTCAA 15994
||||| ||||| | | |||||| ||||| ||| || ||||||||||| |
Sbjct 4824 TGTTGCTGCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCAACAAG 4880
Query 15995 AAGCTGGTTAATAGTTTGTTCCCGTTCATCA--TTCGCTGGCATACCACCAGCACTGCGT 16052
||| ||||| | |||||||| || |||||| | ||| | | | ||| || | |||
Sbjct 4881 AAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCTCCACGT 4938
Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112
|| || || |||||||||||||| ||||||| ||| ||||| |||| ||
Sbjct 4939 TGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTCTTCGCA 4998
Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172
|||||| | || |||||||| || || ||||| ||||||||||| || ||||
Sbjct 4999 TTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACGAAGTCA 5058
Query 16173 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231
| | ||| || | || ||| || || | |||||| || || ||||| || |
Sbjct 5059 GAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGCAAGCAA 5117
Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279
|| ||||| |||||||| ||| | |||||| ||||| |||||
Sbjct 5118 TGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACCTTTAGGAAT 5165
>seq146431
Length=15796
Score = 122 bits (134), Expect = 1e-22
Identities = 154/211 (73%), Gaps = 3/211 (1%)
Strand=Plus/Minus
Query 102103 TCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA 102162
|| ||||| |||| ||| || |||||||| | |||||||||| ||| | ||| |
Sbjct 4356 TCGAAACAATTCCTTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATCGATGGA- 4298
Query 102163 AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 102222
|| | | |||||||| ||| || | || || || |||||||| |||||||||||||
Sbjct 4297 --TCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCT 4240
Query 102223 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282
| ||| |||||| | |||| ||||| ||||| || || |||||||| || | ||
Sbjct 4239 CAGGTAGCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGATTAACCT 4180
Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313
|||| ||||| | ||||| || ||||| ||
Sbjct 4179 TCTCTAACGAATTGATCTCACGAGACGAAGG 4149
>seq27195
Length=13093
Score = 122 bits (134), Expect = 1e-22
Identities = 392/598 (66%), Gaps = 13/598 (2%)
Strand=Plus/Plus
Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780
|| || |||||| | || || | ||||||| | |||| || | | || |||||
Sbjct 8621 GAGCCGCTCCTAACTCCGACGCCGGACAGATTCTGTATGTTTCCGATTCACTACCCACAG 8680
Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 101839
||||||| | || ||||| || | || | | ||||| || ||||| ||||||||
Sbjct 8681 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCGTTCTGGACCGCCGAAGAAGTAGATCT 8739
Query 101840 CTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAA 101897
||| | || ||||| | ||| ||| ||| || || ||| | ||||| |||
Sbjct 8740 ATCACAAGAC--GGACGTGACTGGGAGAATCTCAACGACGGAGAACGTCACTTCATCAAA 8797
Query 101898 TACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAA-CAA 101956
|| |||| || ||||| || | || || ||||| ||| | |||||| || | | |
Sbjct 8798 CACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCTAGAGAATCTCGCTTCTCGA 8857
Query 101957 CTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCA-ATGTCATA 102015
| | | || || ||| |||||||||| | ||||||| | | || || | |
Sbjct 8858 TTCATGTCA-GATGTACAAGTCTCTGAAGCGCGTGCTTTCTACGGATTCCAGATCGCG-A 8915
Query 102016 ATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTG 102075
||| | | ||| |||| || ||| || | || | || || || |||
Sbjct 8916 TTGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTGGATACATACATCAAAGATAACA 8975
Query 102076 CTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGG 102135
|||| | || ||||| || ||| ||||| | || || | ||||||||
Sbjct 8976 AAGAGAGAGATCATCTCTTCCGCGCAATCGAAACAATCCCTTGCGTCGCTAAGAAAGCTC 9035
Query 102136 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 102195
| |||||||||| ||| | ||| | || | | || ||||| ||| || |||| |
Sbjct 9036 AATGGGCTATGACATGGATCGATGGA---TCTCAGACTTTCGCTGAACGAATCGTCGCTT 9092
Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255
| ||||| || || |||||||||||||| ||| |||||| | |||| |||||||| |
Sbjct 9093 TCGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGTTCGATTTTCTGGCTCAAAA 9152
Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313
| ||||| |||||||| || | ||||| |||||| | ||||| || ||||| ||
Sbjct 9153 AACGAGGGCTCATGCCTGGGTTAACTTTCTCAAACGAGTTAATCTCACGAGACGAAGG 9210
>seq99228
Length=25189
Score = 120 bits (132), Expect = 4e-22
Identities = 302/452 (67%), Gaps = 18/452 (4%)
Strand=Plus/Minus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| || ||||| | || | || ||||| || || | | || |||||
Sbjct 21529 CGGTCAAAACGTCCTGGTCTCAGCAAAGCAGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21470
Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001
|| | || | || ||| || |||| ||||||||||||||||| || | |||||
Sbjct 21469 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTAAGGAGCTGA 21413
Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058
|||| ||| ||||| | ||||||||| || |||| || | | | |||| |
Sbjct 21412 TTAAGAGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTA 21356
Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118
|| || ||||| || ||||||| || || ||||| || |||||| || ||
Sbjct 21355 CCAACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCCTTTTTG 21296
Query 16119 AAGAGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176
|| ||||| || ||| ||| ||| || ||||| ||||||||||| ||||| | |
Sbjct 21295 AAAAGATCACG--CACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAAC 21238
Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235
| | | || | | |||||| ||| || |||||| ||||| ||| || | | ||
Sbjct 21237 CCG-AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAATAAGGTT 21179
Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295
||||| ||||| || ||| | ||||| ||||| ||| ||| ||| ||| ||
Sbjct 21178 TTACCAGTACCAGGAGGACCAACAAGGAGAACACCTTTTGGGATCCGGGCACCAACAGCA 21119
Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327
| | |||||||| | ||| ||||| |||||
Sbjct 21118 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 21087
>seq90345
Length=8683
Score = 91.5 bits (100), Expect = 2e-13
Identities = 195/285 (68%), Gaps = 20/285 (7%)
Strand=Plus/Minus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|||||||||||||| ||||| ||||| || || || ||||| | |||||||| | |
Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCC--AC 4893
Query 16035 ATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
| || |||||| | | ||| | || || ||||||||||||||||||||||| || |
Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833
Query 16093 ATGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 16144
| || ||| |||||| || ||||| | ||||| || || || | || ||
Sbjct 4832 AAGGTGCATTGGATTTCGC------CTTGTCAAACAAATCCC-TA-ACCCTAGAAGCACC 4781
Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204
||||| || || | |||||| || | | || | || || ||| || || |
Sbjct 4780 AACACCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGC 4721
Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
||| || || | |||| || | ||||||||| ||||| || ||
Sbjct 4720 TTCTCCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676
>seq229172
Length=5357
Score = 86.0 bits (94), Expect = 8e-12
Identities = 144/201 (72%), Gaps = 12/201 (6%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| ||||| ||||| ||||| || ||||| | |||||||| |
Sbjct 4802 AAACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCC--A 4859
Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | || |||||| | | ||| | || || |||||||||||||||||||| || ||
Sbjct 4860 CCTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 4919
Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147
|| ||| ||||| || || ||||| | ||||| || || || | || || ||
Sbjct 4920 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAAC 4975
Query 16148 ACCAACAAACATCTCCACAAA 16168
||| || || | |||||| ||
Sbjct 4976 ACCGACGAAAAGCTCCACGAA 4996
>seq156032
Length=2901
Score = 82.4 bits (90), Expect = 9e-11
Identities = 128/182 (70%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977
||||| || || | | || ||||| || | |||| |||||| || | | |||||
Sbjct 2716 TCAAGAATGTCTGCTCTGTTGGTTGCAGCAACTACAATAATACCGGTGTTGCCTTCAAAT 2775
Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037
||||||||||| || | ||||| |||| ||||||||| | ||||||||| || |
Sbjct 2776 CCATCCATCTCAGTTAGCAGCTGATTAAGAGTTTGTTCTCTTTCATCATTACCT---CCA 2832
Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
||| || | | | |||| | || || |||||||| ||||| | ||||| |||||
Sbjct 2833 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAG 2892
Query 16095 GG 16096
||
Sbjct 2893 GG 2894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618668903124160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |