Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq251147 152 6e-32 seq119666 132 6e-26 seq248505 129 7e-25 seq146431 122 1e-22 seq27195 122 1e-22 seq99228 120 4e-22 seq90345 91.5 2e-13 seq229172 86.0 8e-12 seq156032 82.4 9e-11 >seq251147 Length=238287 Score = 152 bits (168), Expect = 6e-32 Identities = 267/382 (70%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 15873 ACTTGGATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACG 15932 ||||| | | |||||| || ||||||||||| | ||||| | |||||| | || | Sbjct 146665 ACTTGTACTTGACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCA 146606 Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCT 15989 || || || || || |||| || || ||| |||||| |||||||| |||||||| Sbjct 146605 CGGTTGGTCGCAGCAATGATAATAACGCCT---TCGTTACCTTCAAAACCGTCCATCTCA 146549 Query 15990 GTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GCATACCACCAGCACT 16048 ||| | |||||| | |||||| || || |||||||| | || | |||| || Sbjct 146548 ACCAATAACTGGTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-CCAGAACC 146490 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 16108 || || || || |||||||||||||| ||||||| || || ||| | ||| Sbjct 146489 ACGATGACGACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTT 146430 Query 16109 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 || |||||| | ||| |||||||| || ||||||||||||||||| || || || Sbjct 146429 CGCCTGTTCAAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAA 146370 Query 16169 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227 | | | ||| || | | ||| || || || | |||||| |||||||||| ||| | Sbjct 146369 ATCAGAACCTGAA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCA 146311 Query 16228 GAAGAGTCTTACCCGTACCTGG 16249 || || ||||| |||||||| Sbjct 146310 ATAGCGTTTTACCAGTACCTGG 146289 >seq119666 Length=8982 Score = 132 bits (146), Expect = 6e-26 Identities = 305/452 (67%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 2036 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2095 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| ||||| ||||| Sbjct 2096 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAAGAGCTGA 2152 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| ||| ||||| | ||||||||| || |||| || | | | |||| | Sbjct 2153 TTAAGAGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTA 2209 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||||| || || ||||| || |||||| || || Sbjct 2210 CCAACAGCATCTATTTCATCAACAAAAACAATGCAGGGCGCATTTTCCTTGGCTTTTTTG 2269 Query 16119 AAGAGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || ||| ||| ||| || ||||| || |||||||||||||| | | Sbjct 2270 AAAAGATCACG--CACCCTTGAGGCACCAACACCGACGAACATCTCCACAAACTCAGAAC 2327 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| | |||||| ||||||||| || | || || Sbjct 2328 CCG-AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGGGTT 2386 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 ||||| ||||| || ||| ||||| ||||| || ||| ||| ||| || Sbjct 2387 TTACCAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATCCGGGCACCAACCGCA 2446 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | |||||||||| | ||| ||||| ||||| Sbjct 2447 GTGAATCTCTCAGGCTTCTTCAGAAACTCCAC 2478 >seq248505 Length=7796 Score = 129 bits (142), Expect = 7e-25 Identities = 277/408 (68%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||| | ||| ||||| |||||||| || || | || || | |||||| | || || Sbjct 4764 GATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCACGGTT 4823 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCA---AAACCATCCATCTCTGTCAA 15994 ||||| ||||| | | |||||| ||||| ||| || ||||||||||| | Sbjct 4824 TGTTGCTGCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCAACAAG 4880 Query 15995 AAGCTGGTTAATAGTTTGTTCCCGTTCATCA--TTCGCTGGCATACCACCAGCACTGCGT 16052 ||| ||||| | |||||||| || |||||| | ||| | | | ||| || | ||| Sbjct 4881 AAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCTCCACGT 4938 Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 || || || |||||||||||||| ||||||| ||| ||||| |||| || Sbjct 4939 TGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTCTTCGCA 4998 Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 |||||| | || |||||||| || || ||||| ||||||||||| || |||| Sbjct 4999 TTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACGAAGTCA 5058 Query 16173 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | | ||| || | || ||| || || | |||||| || || ||||| || | Sbjct 5059 GAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGCAAGCAA 5117 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 || ||||| |||||||| ||| | |||||| ||||| ||||| Sbjct 5118 TGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACCTTTAGGAAT 5165 >seq146431 Length=15796 Score = 122 bits (134), Expect = 1e-22 Identities = 154/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 102103 TCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA 102162 || ||||| |||| ||| || |||||||| | |||||||||| ||| | ||| | Sbjct 4356 TCGAAACAATTCCTTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATCGATGGA- 4298 Query 102163 AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 102222 || | | |||||||| ||| || | || || || |||||||| ||||||||||||| Sbjct 4297 --TCTCAAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCT 4240 Query 102223 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282 | ||| |||||| | |||| ||||| ||||| || || |||||||| || | || Sbjct 4239 CAGGTAGCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGATTAACCT 4180 Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||| ||||| | ||||| || ||||| || Sbjct 4179 TCTCTAACGAATTGATCTCACGAGACGAAGG 4149 >seq27195 Length=13093 Score = 122 bits (134), Expect = 1e-22 Identities = 392/598 (66%), Gaps = 13/598 (2%) Strand=Plus/Plus Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780 || || |||||| | || || | ||||||| | |||| || | | || ||||| Sbjct 8621 GAGCCGCTCCTAACTCCGACGCCGGACAGATTCTGTATGTTTCCGATTCACTACCCACAG 8680 Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 101839 ||||||| | || ||||| || | || | | ||||| || ||||| |||||||| Sbjct 8681 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCGTTCTGGACCGCCGAAGAAGTAGATCT 8739 Query 101840 CTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAA 101897 ||| | || ||||| | ||| ||| ||| || || ||| | ||||| ||| Sbjct 8740 ATCACAAGAC--GGACGTGACTGGGAGAATCTCAACGACGGAGAACGTCACTTCATCAAA 8797 Query 101898 TACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAA-CAA 101956 || |||| || ||||| || | || || ||||| ||| | |||||| || | | | Sbjct 8798 CACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCTAGAGAATCTCGCTTCTCGA 8857 Query 101957 CTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCA-ATGTCATA 102015 | | | || || ||| |||||||||| | ||||||| | | || || | | Sbjct 8858 TTCATGTCA-GATGTACAAGTCTCTGAAGCGCGTGCTTTCTACGGATTCCAGATCGCG-A 8915 Query 102016 ATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTG 102075 ||| | | ||| |||| || ||| || | || | || || || ||| Sbjct 8916 TTGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTGGATACATACATCAAAGATAACA 8975 Query 102076 CTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGG 102135 |||| | || ||||| || ||| ||||| | || || | |||||||| Sbjct 8976 AAGAGAGAGATCATCTCTTCCGCGCAATCGAAACAATCCCTTGCGTCGCTAAGAAAGCTC 9035 Query 102136 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 102195 | |||||||||| ||| | ||| | || | | || ||||| ||| || |||| | Sbjct 9036 AATGGGCTATGACATGGATCGATGGA---TCTCAGACTTTCGCTGAACGAATCGTCGCTT 9092 Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255 | ||||| || || |||||||||||||| ||| |||||| | |||| |||||||| | Sbjct 9093 TCGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGTTCGATTTTCTGGCTCAAAA 9152 Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 | ||||| |||||||| || | ||||| |||||| | ||||| || ||||| || Sbjct 9153 AACGAGGGCTCATGCCTGGGTTAACTTTCTCAAACGAGTTAATCTCACGAGACGAAGG 9210 >seq99228 Length=25189 Score = 120 bits (132), Expect = 4e-22 Identities = 302/452 (67%), Gaps = 18/452 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | || ||||| || || | | || ||||| Sbjct 21529 CGGTCAAAACGTCCTGGTCTCAGCAAAGCAGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21470 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| || | ||||| Sbjct 21469 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTAAGGAGCTGA 21413 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| ||| ||||| | ||||||||| || |||| || | | | |||| | Sbjct 21412 TTAAGAGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTA 21356 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||||| || || ||||| || |||||| || || Sbjct 21355 CCAACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCCTTTTTG 21296 Query 16119 AAGAGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || ||| ||| ||| || ||||| ||||||||||| ||||| | | Sbjct 21295 AAAAGATCACG--CACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAAC 21238 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| || |||||| ||||| ||| || | | || Sbjct 21237 CCG-AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAATAAGGTT 21179 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 ||||| ||||| || ||| | ||||| ||||| ||| ||| ||| ||| || Sbjct 21178 TTACCAGTACCAGGAGGACCAACAAGGAGAACACCTTTTGGGATCCGGGCACCAACAGCA 21119 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| ||||| ||||| Sbjct 21118 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 21087 >seq90345 Length=8683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/285 (68%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| ||||| ||||| || || || ||||| | |||||||| | | Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCC--AC 4893 Query 16035 ATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | || |||||| | | ||| | || || ||||||||||||||||||||||| || | Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833 Query 16093 ATGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 16144 | || ||| |||||| || ||||| | ||||| || || || | || || Sbjct 4832 AAGGTGCATTGGATTTCGC------CTTGTCAAACAAATCCC-TA-ACCCTAGAAGCACC 4781 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 ||||| || || | |||||| || | | || | || || ||| || || | Sbjct 4780 AACACCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGC 4721 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| || || | |||| || | ||||||||| ||||| || || Sbjct 4720 TTCTCCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676 >seq229172 Length=5357 Score = 86.0 bits (94), Expect = 8e-12 Identities = 144/201 (72%), Gaps = 12/201 (6%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| ||||| || ||||| | |||||||| | Sbjct 4802 AAACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCC--A 4859 Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | || |||||| | | ||| | || || |||||||||||||||||||| || || Sbjct 4860 CCTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 4919 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| ||||| || || ||||| | ||||| || || || | || || || Sbjct 4920 CAAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAAC 4975 Query 16148 ACCAACAAACATCTCCACAAA 16168 ||| || || | |||||| || Sbjct 4976 ACCGACGAAAAGCTCCACGAA 4996 >seq156032 Length=2901 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/182 (70%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || ||||| || | |||| |||||| || | | ||||| Sbjct 2716 TCAAGAATGTCTGCTCTGTTGGTTGCAGCAACTACAATAATACCGGTGTTGCCTTCAAAT 2775 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 ||||||||||| || | ||||| |||| ||||||||| | ||||||||| || | Sbjct 2776 CCATCCATCTCAGTTAGCAGCTGATTAAGAGTTTGTTCTCTTTCATCATTACCT---CCA 2832 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| || | | | |||| | || || |||||||| ||||| | ||||| ||||| Sbjct 2833 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAG 2892 Query 16095 GG 16096 || Sbjct 2893 GG 2894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618668903124160