Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq251147 125 8e-24 seq99228 111 2e-19 seq146431 105 8e-18 seq231195 84.2 3e-11 seq90345 84.2 3e-11 seq27195 84.2 3e-11 >seq251147 Length=238287 Score = 125 bits (138), Expect = 8e-24 Identities = 256/380 (67%), Gaps = 24/380 (6%) Strand=Plus/Minus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||||||||||||||||||||| | ||| || | |||||| | || ||||||| || || Sbjct 146654 ACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCACGGTTGGTCGC 146595 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 ||||||| | || ||| | | || ||||||||||| || | | |||||| Sbjct 146594 AGCAATGATAATAACGCCTTCGTTACCTTCAAAACCGTCCATCTCAACCAATAACTGGTT 146535 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTG---CCGAAC---GCTTCTT 11675 | || || ||||||||||| || ||| |||| | |||| | | Sbjct 146534 TAGAGTTTGCTCACGCTCATCATTACC------ACCGCCTGTTCCAGAACCACGATGACG 146481 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT------GC 11729 ||| || || ||||||||||||||||| | ||||| ||| |||| | || Sbjct 146480 ACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGT------GCACTTTTCTTCGC 146427 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 |||||| || | ||||||||||| || || ||||| || ||||| || ||||| | Sbjct 146426 CTGTTCAAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAATC 146367 Query 11790 TGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | | ||| | || ||| || || || | |||||||| ||||||| || | || Sbjct 146366 AGAACCTGAAATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAATAG 146307 Query 11850 AGTCTTACCCGTACCAGGTG 11869 || ||||| ||||| |||| Sbjct 146306 CGTTTTACCAGTACCTGGTG 146287 >seq99228 Length=25189 Score = 111 bits (122), Expect = 2e-19 Identities = 330/502 (66%), Gaps = 28/502 (6%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | |||| |||||||| || | | ||| || || Sbjct 21529 CGGTCAAAACGTCCTGGTCTCAGCAAAGCAGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 21470 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| ||||| || || || ||||| || Sbjct 21469 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTAAGGAGCTGATTA 21410 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA--CGCTT--CTTA 11676 | |||||||| | ||||| || | | ||||| | ||| | ||| | || Sbjct 21409 AGAGTCTGTTCTCTTTCATCATTA-----CCT-CCACCAATTCCGGTTCCTCTTTGCCTA 21356 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| || || ||||| | || || || || || || | |||| || | Sbjct 21355 CCAACAGCATCTATTTCATCAACAAAAACAATGCAGGGAGCATTTTCCTTGGCCTTTTTG 21296 Query 11737 AAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||||| ||||| ||| ||| || |||||||| || ||||||||||| || | Sbjct 21295 AAAAGATCACG--CACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACT------ 21244 Query 11795 CAGAACAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 |||||| | || || |||||| ||| || |||||||| || ||| || | | Sbjct 21243 CAGAACCCGAGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATAGCTTTTGCCAATA 21184 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCAC 11908 || ||||| |||||||| | |||| | || || | || |||||| ||||||| Sbjct 21183 AGGTTTTACCAGTACCAGGAGGACCAACAAGGAGAACACCTTTTGGGATCCGGGCACCAA 21124 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968 || | | | |||||||||||| || || ||||| | ||| || || | ||||| Sbjct 21123 CAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATAAAATCTTGCTTGG 21064 Query 11969 CGGAGTCGATACCCTCAACATC 11990 | |||| || ||||||| Sbjct 21063 CTTCATCGACTCCAGCAACATC 21042 >seq146431 Length=15796 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || || ||||| | || ||| |||| | ||||||||||||||| | |||| Sbjct 4149 CCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTTAATCCAGGCATGAGTCCACGTTTC 4208 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| || || | ||| || || || || |||||||| || || ||||| |||||| Sbjct 4209 TTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAGAAGATACCTTCAACACAAGCGAAA 4268 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || | | || |||||||||| | |||| |||| ||| | | |||||| Sbjct 4269 GCTACGATTCGTTCAGCAAAAGTTTGAGATCCATCGATCCAAGTCATAGCCCA 4321 >seq231195 Length=5996 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330 ||| || |||| | ||||||||| |||||||||||||||| ||| || | || | | || Sbjct 2189 ACAAATCTGGGCAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-TGTTGGGCTAGT 2247 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 |||||| | ||||| || || || ||||| ||| ||| ||| | ||| | |||||| Sbjct 2248 GTATTCAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCAAGGTTTTGCTGATT 2307 Query 110391 CGATTTGGAGTTGCATGCATCCT 110413 ||| |||||||| ||||| Sbjct 2308 GCTTTTTCTGTTGCATGAATCCT 2330 >seq90345 Length=8683 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/286 (67%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTT---GGA 11648 |||||| ||||| || || | ||||| |||||||||||||| | |||||| || Sbjct 4951 GAAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCCACC 4892 Query 11649 GGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGAT 11708 ||||||| || | | || | |||| ||||| ||||||||||| ||||| || || Sbjct 4891 TCCCATACCAGCTCC---TCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAAT 4835 Query 11709 ACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 ||| ||| |||| |||| || || | || | || | || |||||||| Sbjct 4834 ACAAGGTGCATTGGATTTCGCCTTGTCAAACAAATCCCTAACCCTAGAAGCACCAACACC 4775 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACC 11828 ||||| | ||| ||||| | | |||| || | ||| || || | || || Sbjct 4774 GACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGCTTCTCC 4715 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCA 11874 ||| | |||| ||| | |||||||| ||||| || || | |||| Sbjct 4714 AGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGGAGGACCA 4669 >seq27195 Length=13093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/177 (71%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGAGTCCTCT 119569 ||||| || || ||||| | ||| || ||| ||||| ||||||||||| |||| Sbjct 9210 CCTTCGTCTCGTGAGATTAACTCGTT--TGAG--AAAGTTAACCCAGGCATGAGCCCTCG 9155 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 ||| || ||||| || || | ||| || || || || |||||||| || || || || || Sbjct 9154 TTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGC 9095 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||||| | || ||||| |||| |||| |||| ||| | | |||||| Sbjct 9094 GAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATCGATCCATGTCATAGCCCA 9038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587008614018400