Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq251147 145 9e-30 seq119666 141 1e-28 seq99228 129 7e-25 seq248505 122 1e-22 seq90345 104 3e-17 seq229172 87.8 2e-12 seq191921 87.8 2e-12 seq204151 82.4 9e-11 >seq251147 Length=238287 Score = 145 bits (160), Expect = 9e-30 Identities = 265/381 (70%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 9180 ACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACG 9239 ||||| | | |||||| || |||||||| || | ||||| | |||||| | || | Sbjct 146665 ACTTGTACTTGACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCA 146606 Query 9240 CGATTCGTCGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTG 9297 || || ||||| || |||| || || ||| ||| | || ||||||| |||||||| Sbjct 146605 CGGTTGGTCGCAGCAATGATAATAACGCCTTCGTTACCTT--CAAAACCGTCCATCTCAA 146548 Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GCATACCACCAGCACTG 9356 ||| | ||||| | |||||| || || |||||||| | || | |||| || Sbjct 146547 CCAATAACTGGTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTT-CCAGAACCA 146489 Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 9416 || || || || |||||||||||||| ||||||| |||||| ||| | ||| Sbjct 146488 CGATGACGACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTTC 146429 Query 9417 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAG 9476 || |||||| | ||| || || | | || ||||||||||||||||| || || || Sbjct 146428 GCCTGTTCAAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAA 146369 Query 9477 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9535 | | | ||| || | | ||| || || || | |||||| |||||||||| ||| | Sbjct 146368 TCAGAACCTGAA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAA 146310 Query 9536 AAGAGTCTTACCCGTACCTGG 9556 || || ||||| |||||||| Sbjct 146309 TAGCGTTTTACCAGTACCTGG 146289 >seq119666 Length=8982 Score = 141 bits (156), Expect = 1e-28 Identities = 302/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 2036 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2095 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| ||||| || || ||| Sbjct 2096 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAAGAGCTGATTA 2155 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | ||| ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 2156 AGAGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGCCTACCA 2212 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||||| || ||||| || || |||||| ||| ||| || Sbjct 2213 ACAGCATCTATTTCATCAACAAAAACAATGCAGGGCGCATTTTCCTTGGCTTTTTTGAAA 2272 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || |||||| ||| || ||||| || |||||||||||||| | | | | | Sbjct 2273 AGATCACGCACCCTTGAGGCACCAACACCGACGAACATCTCCACAAACTCAGAACCCG-A 2331 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| | |||||| ||||||||| || | || || ||||| Sbjct 2332 GATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTACC 2391 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| ||||| |||| || ||| ||| ||| || | | Sbjct 2392 AGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATCCGGGCACCAACCGCAGTGAA 2451 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||||||||| | ||| ||||| ||||| Sbjct 2452 TCTCTCAGGCTTCTTCAGAAACTCCAC 2478 >seq99228 Length=25189 Score = 129 bits (142), Expect = 7e-25 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||||||||||||||| || | || || |||| ||| ||||| | ||||||||| || Sbjct 21442 TCAAAACCATCCATCTCAGTAAGGAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT 21383 Query 9339 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 |||| || | | | |||| | || || ||||| || ||||||| || ||| Sbjct 21382 CC---ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAAACA 21326 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || |||||| ||| ||| || ||||| || |||||| ||| || ||| Sbjct 21325 ATGCAGGGAGCATTTTCCTTGGCCTTTTTGAAAAGATCACGCACCCTTGAGGCACCAACA 21266 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 || ||||||||||| ||||| | | | | | || | | |||||| ||| || ||| Sbjct 21265 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCTTC 21207 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| ||||| ||| || | | || ||||| ||||| || ||| | ||||| | Sbjct 21206 ACCAGCAATAGCTTTTGCCAATAAGGTTTTACCAGTACCAGGAGGACCAACAAGGAGAAC 21147 Query 9575 ACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||| ||| ||| ||| ||| || | | |||||||| | ||| ||||| ||||| Sbjct 21146 ACCTTTTGGGATCCGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 21087 >seq248505 Length=7796 Score = 122 bits (134), Expect = 1e-22 Identities = 270/399 (68%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 ||| | ||| ||||| ||||||||||| || | || || | |||||| | || || Sbjct 4764 GATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCACGGTT 4823 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAA 9301 || || ||||| | | |||||| || || ||| || ||||||||||| | Sbjct 4824 TGTTGCTGCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCAACAAG 4880 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGT 9359 ||||||||| | |||||||| || ||||||| ||| | || ||| || | ||| Sbjct 4881 AAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCCAAG--ACCGGCTCCACGT 4938 Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 9419 || || || |||||||||||||| ||||||| |||||||| |||| || Sbjct 4939 TGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTCTTCGCA 4998 Query 9420 ATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9479 ||||||| | || || || | | || || ||||| ||||||||||| || |||| Sbjct 4999 TTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACGAAGTCA 5058 Query 9480 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | | ||| || | || ||| || || | |||||| || || ||||| || | Sbjct 5059 GAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGCAAGCAA 5117 Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || ||||| |||||||| ||| | |||||| |||| Sbjct 5118 TGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACC 5156 >seq90345 Length=8683 Score = 104 bits (114), Expect = 3e-17 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 |||||||||||||| ||||| || || || || || ||||| | |||||||| | | Sbjct 4950 AAACCATCCATCTCAGTCAAGAGCTGATTGATCGTCTGTTCTCTCTCATCATTTCCA--C 4893 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | ||| ||||| | | ||| | || || |||||||||||||||||||||||||||| Sbjct 4892 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAGACAATAC 4833 Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 | || ||| |||| || | ||||| | ||| | |||||| || || ||| Sbjct 4832 AAGGTGCATTGGATTTC----GCCTTGTCAAACAAATCCCTAACCCTAGAAGCACCAACA 4777 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || || || | |||||| || | | || | || || ||| || || | ||| Sbjct 4776 CCGACGAAAAGCTCCACGAACTCCGACGCAGCGCAAGAGAAGAAAGGCACTCCTGCTTCT 4717 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | |||| || | ||||||||| ||||| || || Sbjct 4716 CCAGCCACAGCTCTAGCCAAAAGAGTCTTCCCCGTCCCCGG 4676 >seq229172 Length=5357 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || ||||| || ||||| | |||||||| | Sbjct 4802 AAACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCCA-- 4859 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | || || |||||||||||||||||||| |||||| Sbjct 4860 CCTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 4919 Query 9399 CATGGT 9404 || ||| Sbjct 4920 CAAGGT 4925 >seq191921 Length=6033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 |||||| |||| || |||||||| ||||| | |||||||||||| |||||||| || ||| Sbjct 2812 ATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTTTGAC 2871 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 106390 || |||||||| || ||||| |||| || || | ||| ||||| ||||| Sbjct 2872 GTTTTTGCAGTCTCCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATTGATGGTA 2931 Query 106391 ACA 106393 ||| Sbjct 2932 ACA 2934 >seq204151 Length=272 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 9359 TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 9418 |||| | || || |||||||| ||||| | |||||||| || || ||||| ||| Sbjct 240 TTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAGGGAGCGTTTTCCTTGGC 181 Query 9419 GATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9478 | | || |||||||| || ||| ||| || ||||| ||||||||||| ||||| | Sbjct 180 TTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTC 121 Query 9479 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9537 | | | | || | || ||| || ||| || |||||| ||||| ||| || | || Sbjct 120 AGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATAGCTTTTGCCAAAA 62 Query 9538 GAGTCTTACCCGTACCTGG 9556 | || || || ||||| || Sbjct 61 GGGTTTTCCCGGTACCAGG 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588010057634720