Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq249645 87.8 2e-12 seq6041 84.2 2e-11 >seq249645 Length=476466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 137500 TTAATCGAGTCCAAGCTATCACCAGATTCAATCAGTACACAAGAACTAAATTGACGTGTT 137559 || || ||||| |||||||||||| |||| || | || || || ||||| ||||| | | Sbjct 264650 TTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGAT 264591 Query 137560 GGTGTACGTACTCCGGCCATGATTGGAGTGGGTAGACTGATTTGCTTTAATGAAACTGCG 137619 || ||||| || || | ||||||||| || ||||| ||||| | ||| || Sbjct 264590 GGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTTTGAATTCTGAGGTCGCA 264531 Query 137620 TCATAAAAGTCTTTAACATATTGTAAACGTTTGCTTTTTTCGTCTT--CCTG-GTGCAGA 137676 ||||| ||| ||| ||||| || ||||| | || || ||| | || | |||| Sbjct 264530 TCATAGAAGCGTTTGACATAATGCAAACGGT--CTGACTT-GTCATAACCAGCAAACAGA 264474 Query 137677 CACATACCAATAAGCATGAATGTGAACTGAGGAGTTTCATGAATTGCACCGTTAGATCGA 137736 ||||| |||| |||||| | |||||| || ||||| || | | | ||| Sbjct 264473 CACATGCCAACGAGCATGTACAAGAACTGCGGGCTTTCAAAAACCGTCTTGGTCACGCGA 264414 Query 137737 TCTTTTACAAGATACTTATCCT 137758 |||| ||||||||| || |||| Sbjct 264413 TCTTGTACAAGATA-TTTTCCT 264393 >seq6041 Length=422222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 69737 ATCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT- 69795 || |||||||||||| |||||| |||||| ||||| ||||||||||||| ||||||| Sbjct 84196 ATATGGTGGGCCCAGTAGGACTTGAACCTACGACCAAAGGATTATGAGTCCTCTGCTCTA 84255 Query 69796 GCCAATTGAGCTATAGGCCCT 69816 |||| |||||||| ||||| Sbjct 84256 ACCAACTGAGCTATGAGCCCT 84276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509527495499680