Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015263.1 Length=114768 Score E Sequences producing significant alignments: (Bits) Value seq158858 87.8 1e-12 >seq158858 Length=235449 Score = 87.8 bits (96), Expect = 1e-12 Identities = 289/438 (66%), Gaps = 15/438 (3%) Strand=Plus/Plus Query 41446 AAAAATGTACGGAAATCACAAAGAAAAAGCTCAAAAAGCTATTAAAA-CATTCGGTTTAT 41504 ||| || || |||| |||| ||||||| | | |||| |||||||| ||| | || Sbjct 171759 AAAGATTTATGGAAGTCACCCAGAAAAAATTAATAAAG-TATTAAAATCATATGAAAAAT 171817 Query 41505 TTGAACGCTCTATGGGTATTATTCTTTCAGGAGATAAAGGAATTGGAAAAACAATGTTTA 41564 ||||||| | ||| |||| | || | |||||||| || ||| | |||||| Sbjct 171818 TTGAACGTAGCTTAGGTCTTATCTTGAGTGGTAACAAAGGAATGGGTAAATCTATGTTTG 171877 Query 41565 --CACGCTACCTTGCA-AATCAATTTGTAGAGGAAAATGAACTACCTGTGATTTTAGTTG 41621 || || ||||| || || || || |||| ||| | || || ||| | ||| Sbjct 171878 TTCAACTTA--TTGCAGAAGCAGTTGTTA----AAAAGGAAATCCCGGTTATTATGGTT- 171930 Query 41622 ACCAAC-CATACTTTGGTATTGCTGATTTCCTTTCTTCTATCAAGCAAGAAGCAATGATT 41680 || || ||| | || |||||||||||| || || | ||||||||| | ||| Sbjct 171931 ACAAAGGCATTCCCAGGGATTGCTGATTTCATTGAACAAATTGACCAAGAAGCATTAATT 171990 Query 41681 CTTTTCGATGAATTTGAAAAGGTCTTTGACCAAAATGATGATAATGCTGAGAGACAAGAT 41740 | || ||||| ||||||||| | || | | | |||| | || || | ||| || Sbjct 171991 ATCTTGGATGAGTTTGAAAAGATGTTCAATCCTCGTAATGAAGAAGCAGAAAAACAGGAA 172050 Query 41741 TCATTGCTTGGATTGTTTGATGGGCTATCTAGCACAAAACACATGTATGTAATCACGGTT 41800 || || || || |||||||| ||| | |||| || |||| || ||||| Sbjct 172051 AACTTACTGGGGTTATTTGATGGTACTTCTCAGAAGAAACGTATCTATGCGATTACGGTA 172110 Query 41801 AATGA-CTTAAATCGTTTAAGTAGTTTCATGCAAAATCGTACTGGACGATTTCATTACCA 41859 || || ||||| | | || ||||| ||| || ||| |||| ||||| |||||||| Sbjct 172111 AACGATCTTAATAAGGTAAATGAGTTT-ATGTTAAGCCGTCCTGGTCGATTCCATTACCA 172169 Query 41860 TTTCCGATTCAAATATCC 41877 | ||||||| | ||||| Sbjct 172170 TATCCGATTTGATTATCC 172187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365937106752732