Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015274.1 Length=56506 Score E Sequences producing significant alignments: (Bits) Value seq216341 156 2e-33 >seq216341 Length=52376 Score = 156 bits (172), Expect = 2e-33 Identities = 231/325 (71%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 208 TTATGACTATAATCCAGACGTCCTTGAAACTTTCCCTAACAAACATCCTGAAAATAATTA 267 || ||| || | || || || |||||| | ||||| ||| ||||| ||||| |||| Sbjct 25931 TTTTGAATACCAACCGGAAGTGCTTGAAGCCTTCCCGAACCGTCATCCGGAAAACGATTA 25990 Query 268 CCTAGTAACATTTGACGGATATGAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGA 327 | | || | ||| ||| | |||||||| ||||||||| | || ||||| || Sbjct 25991 CTTCGTTAAATTCAACGCACCGGAATTCACAAGCCTTTGCCCGATTACGAATCAGCCGGA 26050 Query 328 CTTCGCGAATGTTTTCATTAGTTACATTCCAAACGAAAAGATGGTTGAATCTAAATCATT 387 || |||| ||| || || ||||| |||| || |||| || || |||||||| Sbjct 26051 TTTTGCGACCATTTATATCTCGTATATTCCGGACGAGAAATTGGTGGAGTCGAAATCATT 26110 Query 388 GAAATTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACAT 447 ||| | ||||| ||||| ||||||||||||||||| ||||||||| | ||||| ||| | Sbjct 26111 AAAACTCTACTTGTTCAGCTTCCGTAACCACGGTGATTTCCACGAAAACTGCATCAACGT 26170 Query 448 TATTTTGAATGA-CTTGTATGAATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTAT 506 || ||| || || || ||||||||||||| ||| | |||||| |||| | Sbjct 26171 CATCGGGAAAGATCTCGT-CAAATTGATGGAACCCCGTTACCTCGAAGTCTGGGGCAAGT 26229 Query 507 TCACTCCTCGTGGTGGAATTTCAAT 531 |||| || || || |||||||| || Sbjct 26230 TCACGCCACGCGGCGGAATTTCGAT 26254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180124186433248