Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 553 2e-152
seq218717 131 2e-25
seq44076 122 1e-22
seq136041 114 1e-20
seq165026 82.4 9e-11
>seq28607
Length=83266
Score = 553 bits (612), Expect = 2e-152
Identities = 700/960 (73%), Gaps = 2/960 (0%)
Strand=Plus/Minus
Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501
|||| |||||||||||| | ||||| || |||| | || ||| | | ||| ||
Sbjct 1462 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTA 1403
Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561
| ||||||||||| || ||||| || ||||| || || || | ||||| || | || |
Sbjct 1402 TCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1343
Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620
|| ||||| || || ||||| || || || ||||| || |||| | || |||||
Sbjct 1342 CTCTTCTT-TACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 1284
Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680
|| | || || ||||| ||||||||||| ||| | |||||||||||| | || || ||
Sbjct 1283 GGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 1224
Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740
||||||||| | | | | | ||||| | ||||| | | || ||||| |
Sbjct 1223 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1164
Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800
|||||||||| | | | | || |||||||||||||| ||||||||| || ||
Sbjct 1163 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1104
Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860
|| || | |||||| ||||| ||||| | |||||| ||||||| || || |||
Sbjct 1103 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 1044
Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920
||||||||||| ||||| ||||| |||||||||||||||||| | || ||||| || |||
Sbjct 1043 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 984
Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980
|| |||||||| ||||| || || |||||| ||| ||||| || | ||||| || ||
Sbjct 983 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 924
Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040
|||| || ||||||||||| | || ||||| | | ||||| ||||| |||||
Sbjct 923 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 864
Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100
| || || || | ||||| || |||||||||||||||||||| |||||||| |||
Sbjct 863 AATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTA 804
Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160
|| || || ||||| ||||| || | |||||||| |||||| |||||||| || |
Sbjct 803 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 744
Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220
| |||| |||||| |||| | || || || ||| || | ||||| || || | |||
Sbjct 743 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 684
Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280
|| |||| ||||| |||||| | ||||||||||| || ||||||||||| |||||| |
Sbjct 683 ATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGT 624
Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340
| ||| | | || |||| |||| || | ||| | || ||| | |||||||||
Sbjct 623 CAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 564
Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 170400
|||||||||||| | ||||| ||||||||||| ||||||||||| ||| |||| || ||
Sbjct 563 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 504
Score = 358 bits (396), Expect = 8e-94
Identities = 701/1038 (68%), Gaps = 21/1038 (2%)
Strand=Plus/Plus
Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588
|||||| || | || ||||||||| ||| || || || || || |||| |||||||||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648
|| || || | |||||||| || | | | || ||||||||| ||| || |||||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708
|| || ||||||||||| ||||| | ||| || ||| | || || || || || ||
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583
Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768
|| || || ||||| || |||| | | | ||| | | |||| || |||||
Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643
Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828
|||||||||||||| ||| |||||||| ||| | || ||| | ||| |||||
Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703
Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888
|| | || || | || | | | |||||||| ||| | | |||||||| | || ||
Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763
Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948
|| | ||||||| || ||| |||||||||||| | || || || || |
Sbjct 32764 TCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32823
Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008
|||| || || |||||||| ||||| |||||||||| || || || |||
Sbjct 32824 TCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32883
Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068
|| || || || ||||| | ||| | || | ||||| || || || ||||||||
Sbjct 32884 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 32943
Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128
|||||||| |||||||| || || || |||| || | || | |||| || ||||||
Sbjct 32944 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCAT 33003
Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188
||||| || || | || || || | ||||| || |||| |
Sbjct 33004 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 33046
Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248
|||| ||||||||||| ||| | || || || | ||||||||||| ||| |
Sbjct 33047 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 33102
Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308
|| || ||| | || |||||||| || ||||| ||||||| || || ||| | | |||
Sbjct 33103 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 33162
Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368
|| ||| ||||||| || || || || | ||| | |||| || | || | ||
Sbjct 33163 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 33222
Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428
|| ||||| | ||||| | || || || || || || || || || | ||||| |||
Sbjct 33223 GGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 33282
Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488
|| || || || ||||||||||| ||||| ||||| ||| | || |||||||| | ||
Sbjct 33283 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 33342
Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548
|||||| | | || || || ||||| ||| | ||||||| || || || |||||
Sbjct 33343 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 33402
Query 171549 AGAGGTAACGCACTTTAA 171566
| || ||||| ||||||
Sbjct 33403 CGTGGAAACGCTCTTTAA 33420
>seq218717
Length=448
Score = 131 bits (144), Expect = 2e-25
Identities = 140/184 (76%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTAT-CTGCTGCATTCGCTGT 169823
|| |||||||||||||| ||||||||| || || || || | | ||||| | | |||
Sbjct 190 GGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGT 131
Query 169824 ATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 169883
||||| | || ||| ||||||| || || | | |||||||||| ||||| |||||
Sbjct 130 TTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTC 71
Query 169884 AGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 169943
|||||||||||||||| | || ||||| || ||||| |||||||| ||||| || ||
Sbjct 70 TTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 11
Query 169944 CCAC 169947
|||
Sbjct 10 TCAC 7
>seq44076
Length=2602
Score = 122 bits (134), Expect = 1e-22
Identities = 165/228 (72%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||| ||| ||| |||||||||||| |||| ||||| || || |||||||||
Sbjct 1200 GATATTGTTGTTGGTTCGGCTCAAAGGTTTGGTGTTCCGATGGGTTACGGTGGTCCTCAT 1141
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864
||||| ||||| || || || | |||||||||||| ||| ||||| || ||| | |
Sbjct 1140 GCTGCGTTCTTGGCTACTTCACAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGT 1081
Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
|| ||| || ||| || || ||| | | || | |||||||| || |
Sbjct 1080 GTTAGT--GTTGATTCCTTTGGGAAGCCAGCTCTGCGTATGGCGATGCAGACTAGGGAAC 1023
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972
||||||| ||||| |||||||| || || |||||||| || |||||||
Sbjct 1022 AGCATATTAGGAGGGACAAAGCCACTAGCAACATCTGTACTGCTCAGG 975
Score = 105 bits (116), Expect = 8e-18
Identities = 126/170 (74%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 153260 TCTTG-AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 153318
||||| |||||||| |||||| || |||||||| |||||||||||||| |||||||
Sbjct 1685 TCTTGGAGAATCCTGCTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATCTCTCAGG 1626
Query 153319 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAA 153378
| | | ||| | || |||||| ||| ||| | || || || || || || |||| |
Sbjct 1625 GTCGTCTTGAATCGTTGCTCAATTTCCAGACGATGATTACTGATCTCACCGGGCTACCTA 1566
Query 153379 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428
| | ||||| || | ||||| |||| |||||||| || || ||||||
Sbjct 1565 TGTCTAACGCTTCCTTGTTAGACGAAGGTACTGCAGCTGCGGAGGCAATG 1516
>seq136041
Length=4749
Score = 114 bits (126), Expect = 1e-20
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805
|||||||| ||| ||| |||||||||||| |||| ||||| ||||| ||||||||
Sbjct 3556 TGATATTGTTGTTGGTTCGGCTCAAAGGTTTGGTGTTCCGATGGGTTATGGTGGTCCTCA 3615
Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG- 153864
|||||| || || || || || | |||||||||| | ||| ||||| || ||| | |
Sbjct 3616 TGCTGCGTTTTTGGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGG 3675
Query 153865 -GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923
|| ||| || ||| || || ||| | | || | |||||||| ||
Sbjct 3676 TGTTAGT--GTTGATTCCTTTGGGAAGCCAGCTCTTCGTATGGCGATGCAGACTAGGGAA 3733
Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972
|||||||| ||||| || ||||| || || |||||||| || |||||||
Sbjct 3734 CAGCATATTAGGAGGGATAAAGCCACTAGCAACATCTGTACTGCTCAGG 3782
Score = 100 bits (110), Expect = 3e-16
Identities = 125/170 (74%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 153260 TCTT-GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 153318
|||| ||||||||| |||||| || |||||||| |||||||||||||| ||||| |
Sbjct 3072 TCTTAGAGAATCCTGCTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATCTCTCAAG 3131
Query 153319 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAA 153378
| | | || | || | |||| ||| ||| | || || || || || |||||||| |
Sbjct 3132 GTCGTCTTGAGTCGTTGCTTAATTTCCAGACGATGATTACTGATCTCACTGGATTACCTA 3191
Query 153379 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428
| | || || || | ||||| |||| |||||||| || |||||||||
Sbjct 3192 TGTCTAATGCTTCGTTGTTAGACGAAGGTACTGCAGCTGCTGAAGCAATG 3241
>seq165026
Length=1563
Score = 82.4 bits (90), Expect = 9e-11
Identities = 86/111 (77%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077
||| || ||||| || ||||| || | || || || ||||||||||| |||||||||||
Sbjct 848 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 907
Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT--AGCAAAACATCTCACACCATTT 155126
|||||||| | ||||| || ||||| ||| ||||| | ||||||||
Sbjct 908 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGC--AACATTTGGCACCATTT 956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577278026523520
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