Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq28607 659 0.0 seq218717 125 8e-24 >seq28607 Length=83266 Score = 659 bits (730), Expect = 0.0 Identities = 728/967 (75%), Gaps = 2/967 (0%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 || || || || |||| ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 1475 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 1417 Query 163871 CATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 | ||| || |||| ||| | |||||||| || || || || |||||||||||||| Sbjct 1416 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1357 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 ||||||| | || || || | || || ||||| || || || ||||| || |||| | Sbjct 1356 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 1297 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || |||||| | || || ||||| || |||||||| |||||| |||||||||| Sbjct 1296 TTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATG 1237 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110 ||| |||||||| ||||||| |||| | || | ||||| | | ||| | | Sbjct 1236 GCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 1177 Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170 || |||||||||||||||||||| || |||||| |||||||||||||||||| ||| Sbjct 1176 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 1117 Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 ||| || || || || |||||||| ||| | || || ||| || |||| || | ||||| Sbjct 1116 TGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCA 1057 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || ||||| | ||||| || || |||||||| || ||||||| ||| | || Sbjct 1056 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 997 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 ||||| || ||||||||||| || |||||||| || || ||| | || || ||||| || Sbjct 996 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 937 Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410 ||| ||||| || || || ||||| ||||| ||||| |||| |||||| || | | Sbjct 936 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 877 Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 |||||||| |||| ||| || || | |||||||| || || |||||||||||||| Sbjct 876 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAAC 817 Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 ||||||||||| || ||||| ||||| ||||| || ||||||||||||| ||| || Sbjct 816 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 757 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590 |||||| || ||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 756 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 697 Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650 || || | ||| || ||| ||||| |||||||| || |||||||| |||||||| || Sbjct 696 TACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 637 Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710 | | ||| |||| || ||||| | || |||||||| || || | ||||| ||| Sbjct 636 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 577 Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770 || ||||||||||||||||| || ||||| ||||||||||||||||| || || ||||| Sbjct 576 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 517 Query 164771 TGCTGAG 164777 || |||| Sbjct 516 TGTTGAG 510 Score = 578 bits (640), Expect = 4e-160 Identities = 731/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || || ||||||||||| ||||||||||| || | || ||| Sbjct 32416 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32475 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| | || || || || || | || ||| Sbjct 32476 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32535 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385 |||||||| || ||||| ||||||||| | || ||| || ||| | || || || ||| Sbjct 32536 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 32595 Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445 || ||||| || | | | | |||||| | || | || ||||||||||| || ||| Sbjct 32596 TCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32655 Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505 || ||||| | ||| ||| | || || || ||||||||||| || |||||||| Sbjct 32656 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 32715 Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564 |||||||| |||| ||||| ||| | ||||| |||||| | || || || || | | Sbjct 32716 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-T 32774 Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624 || || || ||||| || || ||||||||||| || |||||||||||| ||||| || Sbjct 32775 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 32834 Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684 || || || ||||||||||| ||||||| || || || ||| || || || || || Sbjct 32835 AATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 32894 Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744 || | ||| | ||||| | ||||| || ||||| ||||| ||||| || |||||||| Sbjct 32895 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 32954 Query 165745 GATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 165804 |||||| || || ||| | ||||| | || |||| | || || ||||||| ||| || Sbjct 32955 GATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGT 33014 Query 165805 AGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTAC 165864 ||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | || Sbjct 33015 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33074 Query 165865 TCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGG 165924 ||||| |||||||| || |||||||| || || ||||| || ||||| || ||||| || Sbjct 33075 TCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 33134 Query 165925 TATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 165984 |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 33135 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 33194 Query 165985 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 166044 | | |||| ||| | | || | | || || ||| | ||||| ||||| |||||||| Sbjct 33195 TTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTT 33254 Query 166045 TGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAA 166104 || ||||| || ||| | ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 33255 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 33314 Query 166105 CATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAA 166164 ||||| || || |||||| ||||||||||| |||| | ||||| || ||||| || Sbjct 33315 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33374 Query 166165 CTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | || | |||||||| || ||||| || | || ||||| || Sbjct 33375 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416 >seq218717 Length=448 Score = 125 bits (138), Expect = 8e-24 Identities = 160/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 || ||| |||||||||||||||| || |||| |||||||||||||||||| |||| Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 164172 GCTTACTCTGCACCCG-TTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 || || || || || | ||||||| || | || ||| || | ||||| | ||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || | | | | ||||| || || |||||| | || ||||||| || | || Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCA 164329 ||||| || ||||||||||| || |||||||| || || Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555064476244320