Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 558 4e-154
seq218717 134 2e-26
>seq28607
Length=83266
Score = 558 bits (618), Expect = 4e-154
Identities = 723/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Minus
Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550
||||| | ||| |||| |||||| | || | ||||| |||| ||||| ||||| ||
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610
|||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| ||
Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383
Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670
|| || ||||| || || || | |||||||| | || |||| | || ||||||||
Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323
Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730
|| || |||||||| || |||| |||| || || ||| | || || ||||| ||
Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263
Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790
|||||||| || | | ||||| ||| |||| || || |||||||| | | | |
Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203
Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850
| ||||| || | || | || || |||||| | |||||||| | | | |
Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143
Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910
|| |||||| | |||||||| |||||| |||||||| || || | || ||| |||
Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083
Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970
|| ||| | | |||||| ||||||| || ||| |||||||||||||||||||||||
Sbjct 1082 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1023
Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030
||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| ||
Sbjct 1022 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 963
Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090
|| || ||| ||| ||||| ||| | ||||| || || ||||| || |||||||||
Sbjct 962 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 903
Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150
|| | ||||| ||| | | ||||| || || || || | |||||| || | |||
Sbjct 902 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 843
Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210
||||| ||||| |||||||||||||| || || ||||| || || ||||| || || ||
Sbjct 842 TACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 783
Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270
|||| |||||||| ||||| ||||||||||| || | | | || |||||| ||||
Sbjct 782 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 723
Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330
| | || || ||| || | ||||| || || | ||||| | || ||||| ||||||
Sbjct 722 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAAC 663
Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390
| || || || || || ||||||||||| || ||| | | || | ||| |||
Sbjct 662 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 603
Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450
|||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| |||
Sbjct 602 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 543
Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACA 169489
||||||||||| |||||| |||| ||| |||| || ||
Sbjct 542 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 504
>seq218717
Length=448
Score = 134 bits (148), Expect = 2e-26
Identities = 142/186 (76%), Gaps = 1/186 (1%)
Strand=Plus/Minus
Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTAT-CTGCAGCATTTGC 168909
|| |||||| | |||||||| |||||| |||||||| || || | | || || |||
Sbjct 193 CTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGT 134
Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969
|| ||| | | || ||| ||||||| || ||| | | |||||||||||||||||||
Sbjct 133 TGTTTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAAT 74
Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029
||| | || |||||||| || | |||||||| || |||||||||||||||||||| ||
Sbjct 73 CTCTTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 14
Query 169030 CTTCCA 169035
|| ||
Sbjct 13 ATTTCA 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562556167501440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |