Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq28607 520 1e-142 seq218717 125 8e-24 seq44076 116 4e-21 seq136041 100 3e-16 seq165026 91.5 2e-13 seq9459 86.0 7e-12 seq249645 82.4 9e-11 >seq28607 Length=83266 Score = 520 bits (576), Expect = 1e-142 Identities = 717/1000 (72%), Gaps = 2/1000 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | || | |||| |||| ||||| ||||| | Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | ||||||||||| || ||| Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998 || || ||||| || || || | ||||| ||| | || ||| ||||| || || ||||| Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACAA 1324 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 || || || ||||| || |||| | || || || ||| | || || ||||| || Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 1264 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 ||||||||| ||| |||| ||||||||| | ||||| || ||||||||| | | | | Sbjct 1263 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1204 Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 | ||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 1203 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1144 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 | |||||| | || ||||| ||| ||||||||||| ||||| |||| ||| ||| Sbjct 1143 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1084 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 ||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 1083 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1024 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 ||| ||||| |||||||||||| | || ||||| || ||||| |||||||| ||||| || Sbjct 1023 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 964 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 || |||||| ||| ||||| || | || || || || |||| || ||||| || Sbjct 963 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 904 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 ||| || || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 903 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 ||||| |||||||||||||||||||| |||||||| ||||| || || ||||| ||||| Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 || | |||||||| |||||| ||||||||| || | | | || |||||| |||| Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724 Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658 | || || || ||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664 Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718 ||| || |||||||| |||||||||||||| || ||| | | || || || ||| Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCA 172818 ||||||||||| ||||||| ||| ||| ||| || || Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 504 Score = 354 bits (392), Expect = 1e-92 Identities = 699/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || |||||| Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || || || || || |||| | | | ||| | | |||| || ||||| Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || ||| ||||| Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || | | | |||||||| ||| | ||||| ||||| | || || Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 || | ||||||| || ||| |||||||||||| | || || || || | Sbjct 32764 TCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32823 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 |||| |||| || ||||| || || |||||||||| || ||| || ||| Sbjct 32824 TCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32883 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 32884 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 32943 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| || || || |||| || | || | ||||| || |||||| Sbjct 32944 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCAT 33003 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| ||| Sbjct 33004 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 33045 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 33046 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 33102 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || |||||||| || ||||| | || ||||| || ||| | | ||| Sbjct 33103 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 33162 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 33163 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 33222 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 || || || | ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 33223 GGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 33282 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || ||||||||||| ||||| ||||| ||| | || |||||||| | || Sbjct 33283 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 33342 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || ||||| Sbjct 33343 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 33402 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 33403 CGTGGAAACGCTCTTTAA 33420 >seq218717 Length=448 Score = 125 bits (138), Expect = 8e-24 Identities = 139/184 (76%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTAT-CAGCAGCATTTGCTGT 172241 |||||| | || ||||| ||| ||||||||||| ||||| | |||| || ||| ||| Sbjct 190 GGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGT 131 Query 172242 GTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 172301 ||| | | |||||| | ||||| || || | | |||||||||| ||||| ||||| Sbjct 130 TTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTC 71 Query 172302 AGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 172361 |||| ||||||||||| | || ||||| || ||||| |||||||| ||||| || || Sbjct 70 TTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 11 Query 172362 CCAC 172365 ||| Sbjct 10 TCAC 7 >seq44076 Length=2602 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| ||||| |||||||||||||| ||||| || || || Sbjct 1179 CAAAGGTTTGGTGTTCCGATGGGTTACGGTGGTCCTCATGCTGCGTTCTTGGCTACTTCA 1120 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| ||||| || ||| | | || ||| || ||| | | Sbjct 1119 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCCTTTG 1062 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | || | |||||||| || |||||||| || || ||||||| Sbjct 1061 GGAAGCCAGCTCTGCGTATGGCGATGCAGACTAGGGAACAGCATATTAGGAGGGACAAAG 1002 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | || || |||||||| || || || Sbjct 1001 CCACTAGCAACATCTGTACTGCTCA 977 Score = 114 bits (126), Expect = 2e-20 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 157935 TCTTG-AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 157993 ||||| |||||||| |||||| || |||||||| |||||||||||||| ||||||| Sbjct 1685 TCTTGGAGAATCCTGCTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATCTCTCAGG 1626 Query 157994 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA 158053 | | | ||| | || |||||| ||| ||| | || || || ||||| || ||||| | Sbjct 1625 GTCGTCTTGAATCGTTGCTCAATTTCCAGACGATGATTACTGATCTCACCGGGCTACCTA 1566 Query 158054 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | | ||||| || | ||||| |||| |||||||| || || |||||| Sbjct 1565 TGTCTAACGCTTCCTTGTTAGACGAAGGTACTGCAGCTGCGGAGGCAATG 1516 >seq136041 Length=4749 Score = 100 bits (110), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 157935 TCTT-GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 157993 |||| ||||||||| |||||| || |||||||| |||||||||||||| ||||| | Sbjct 3072 TCTTAGAGAATCCTGCTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATCTCTCAAG 3131 Query 157994 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA 158053 | | | || | || | |||| ||| ||| | || || || ||||| ||| |||| | Sbjct 3132 GTCGTCTTGAGTCGTTGCTTAATTTCCAGACGATGATTACTGATCTCACTGGATTACCTA 3191 Query 158054 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | | || || || | ||||| |||| |||||||| || ||||||||| Sbjct 3192 TGTCTAATGCTTCGTTGTTAGACGAAGGTACTGCAGCTGCTGAAGCAATG 3241 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || |||||||||||||| || || || || || Sbjct 3578 CAAAGGTTTGGTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCGTTTTTGGCTACTTCA 3637 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||| | ||| ||||| || ||| | | || ||| || ||| | | Sbjct 3638 CAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCCTTTG 3695 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | || | |||||||| || |||||||| || || || |||| Sbjct 3696 GGAAGCCAGCTCTTCGTATGGCGATGCAGACTAGGGAACAGCATATTAGGAGGGATAAAG 3755 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | || || |||||||| || || || Sbjct 3756 CCACTAGCAACATCTGTACTGCTCA 3780 >seq165026 Length=1563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/111 (79%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 848 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 907 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| ||| ||||| | |||||||| Sbjct 908 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGC--AACATTTGGCACCATTT 956 >seq9459 Length=1126 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 135006 CATCCTACACAAAAACCAGTTCCTGTATTGGAGTGGTTGATAACAACATTTTCTAATGAA 135065 ||||| || || ||||| ||||| || | || | ||||| | || | | ||| ||| Sbjct 786 CATCCCACCCAGAAACCGGTTCCACTACTTGAATACTTGATTAAGACGTATACTAGTGAG 845 Query 135066 GGTGATACTGTATTAGACAACTGCATGGGGTCTGGTTCTACAGGTGTCGCAGCAGTCAAA 135125 || || || || | || ||||||||||| |||||| ||| || || || || ||||| Sbjct 846 GGAGAGACAGTCCTTGATAACTGCATGGGTTCTGGTAGTACTGGCGTAGCCGCTGTCAAT 905 Query 135126 CTTAACAGAAAGTTTATAGGTATTGACACTGATGAAAAATATGTTACAAT 135175 || |||||| ||| || || || || ||||| |||||| ||| ||| Sbjct 906 CTAAACAGAGCGTTCATTGGCATGGAATTAGATGATAAATATTTTAAAAT 955 >seq249645 Length=476466 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 156608 GTCAATATTCTTGAAGGCATTAGGTTCTATGTCTCCTTCGCTTGCTCGTTTGCGTTTGGT 156667 ||||| | || |||| |||| | ||||||||||| || ||||||||||||||||||| | Sbjct 268785 GTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCT 268844 Query 156668 GAACTCAAAGTTATGGAAGG 156687 || | |||| | |||||||| Sbjct 268845 GAGCGCAAATTGATGGAAGG 268864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586086903174080