Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 520 1e-142
seq218717 125 8e-24
seq44076 116 4e-21
seq136041 100 3e-16
seq165026 91.5 2e-13
seq9459 86.0 7e-12
seq249645 82.4 9e-11
>seq28607
Length=83266
Score = 520 bits (576), Expect = 1e-142
Identities = 717/1000 (72%), Gaps = 2/1000 (0%)
Strand=Plus/Minus
Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879
||||| | ||| ||||| ||| | || | |||| |||| ||||| ||||| |
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939
|||||||| || | || ||| | | || || | ||||||||||| || |||
Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383
Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998
|| || ||||| || || || | ||||| ||| | || ||| ||||| || || |||||
Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACAA 1324
Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058
|| || || ||||| || |||| | || || || ||| | || || ||||| ||
Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 1264
Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118
||||||||| ||| |||| ||||||||| | ||||| || ||||||||| | | | |
Sbjct 1263 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1204
Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178
| ||||| | | ||| | | || ||||| | |||||||||| | | |
Sbjct 1203 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1144
Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238
| |||||| | || ||||| ||| ||||||||||| ||||| |||| ||| |||
Sbjct 1143 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1084
Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298
||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| ||
Sbjct 1083 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1024
Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358
||| ||||| |||||||||||| | || ||||| || ||||| |||||||| ||||| ||
Sbjct 1023 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 964
Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418
|| |||||| ||| ||||| || | || || || || |||| || ||||| ||
Sbjct 963 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 904
Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478
||| || || || ||| | | ||||| || || || ||| ||||| || | ||
Sbjct 903 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844
Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538
||||| |||||||||||||||||||| |||||||| ||||| || || ||||| |||||
Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784
Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598
|| | |||||||| |||||| ||||||||| || | | | || |||||| ||||
Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724
Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658
| || || || ||| || | ||||| || || | ||||| | || ||||| |||||
Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664
Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718
||| || |||||||| |||||||||||||| || ||| | | || || || |||
Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604
Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778
|||| ||| || ||||| | || ||||| ||||||||||||||||||||| | |||||
Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544
Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCA 172818
||||||||||| ||||||| ||| ||| ||| || ||
Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 504
Score = 354 bits (392), Expect = 1e-92
Identities = 699/1038 (67%), Gaps = 21/1038 (2%)
Strand=Plus/Plus
Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010
|||||| || | || ||||||||| ||| || || ||||| || | || |||||||||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070
|| || || | |||||||| || | || | || ||||||||| ||| || |||||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130
|| || ||||||||||| ||||| | || ||| ||| | ||||| || ||||||
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583
Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190
|| || || || || || |||| | | | ||| | | |||| || |||||
Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643
Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250
|||||||||||||| || ||||||| ||| | || || || ||| |||||
Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703
Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310
|| | || || | || | | | |||||||| ||| | ||||| ||||| | || ||
Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763
Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370
|| | ||||||| || ||| |||||||||||| | || || || || |
Sbjct 32764 TCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32823
Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430
|||| |||| || ||||| || || |||||||||| || ||| || |||
Sbjct 32824 TCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32883
Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490
|| || || || ||||| | ||| | || | ||||| || || || ||||||||
Sbjct 32884 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 32943
Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550
|||||||| |||||||| || || || |||| || | || | ||||| || ||||||
Sbjct 32944 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCAT 33003
Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610
||||| || || | || || || | ||||| || ||| |||
Sbjct 33004 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 33045
Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670
| | || ||| | || ||| | || || || | |||||||||||| ||| |
Sbjct 33046 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 33102
Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730
|| || ||| | || |||||||| || ||||| | || ||||| || ||| | | |||
Sbjct 33103 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 33162
Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790
|| ||| | ||||| || ||||| || | ||| | |||| | | || | ||
Sbjct 33163 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 33222
Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850
|| || || | ||||| | || || ||||| || || || || || | ||||| |||
Sbjct 33223 GGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 33282
Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910
||||| || || ||||||||||| ||||| ||||| ||| | || |||||||| | ||
Sbjct 33283 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 33342
Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970
|||||| | || |||||| || ||||| ||| | |||| || || || || |||||
Sbjct 33343 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 33402
Query 173971 AGAGGTAACGCACTTTAA 173988
| || ||||| ||||||
Sbjct 33403 CGTGGAAACGCTCTTTAA 33420
>seq218717
Length=448
Score = 125 bits (138), Expect = 8e-24
Identities = 139/184 (76%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTAT-CAGCAGCATTTGCTGT 172241
|||||| | || ||||| ||| ||||||||||| ||||| | |||| || ||| |||
Sbjct 190 GGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGT 131
Query 172242 GTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 172301
||| | | |||||| | ||||| || || | | |||||||||| ||||| |||||
Sbjct 130 TTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTC 71
Query 172302 AGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 172361
|||| ||||||||||| | || ||||| || ||||| |||||||| ||||| || ||
Sbjct 70 TTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 11
Query 172362 CCAC 172365
|||
Sbjct 10 TCAC 7
>seq44076
Length=2602
Score = 116 bits (128), Expect = 4e-21
Identities = 150/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|||||||||||| |||| ||||| ||||| |||||||||||||| ||||| || || ||
Sbjct 1179 CAAAGGTTTGGTGTTCCGATGGGTTACGGTGGTCCTCATGCTGCGTTCTTGGCTACTTCA 1120
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560
| |||||||||||| ||| ||||| || ||| | | || ||| || ||| | |
Sbjct 1119 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCCTTTG 1062
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || ||| | | || | |||||||| || |||||||| || || |||||||
Sbjct 1061 GGAAGCCAGCTCTGCGTATGGCGATGCAGACTAGGGAACAGCATATTAGGAGGGACAAAG 1002
Query 158621 CAACCAGTAACATCTGCACAGCACA 158645
| || || |||||||| || || ||
Sbjct 1001 CCACTAGCAACATCTGTACTGCTCA 977
Score = 114 bits (126), Expect = 2e-20
Identities = 128/170 (75%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 157935 TCTTG-AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 157993
||||| |||||||| |||||| || |||||||| |||||||||||||| |||||||
Sbjct 1685 TCTTGGAGAATCCTGCTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATCTCTCAGG 1626
Query 157994 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA 158053
| | | ||| | || |||||| ||| ||| | || || || ||||| || ||||| |
Sbjct 1625 GTCGTCTTGAATCGTTGCTCAATTTCCAGACGATGATTACTGATCTCACCGGGCTACCTA 1566
Query 158054 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103
| | ||||| || | ||||| |||| |||||||| || || ||||||
Sbjct 1565 TGTCTAACGCTTCCTTGTTAGACGAAGGTACTGCAGCTGCGGAGGCAATG 1516
>seq136041
Length=4749
Score = 100 bits (110), Expect = 3e-16
Identities = 125/170 (74%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 157935 TCTT-GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 157993
|||| ||||||||| |||||| || |||||||| |||||||||||||| ||||| |
Sbjct 3072 TCTTAGAGAATCCTGCTTGGTATACTCAGTACACTCCTTATCAAGCTGAGATCTCTCAAG 3131
Query 157994 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA 158053
| | | || | || | |||| ||| ||| | || || || ||||| ||| |||| |
Sbjct 3132 GTCGTCTTGAGTCGTTGCTTAATTTCCAGACGATGATTACTGATCTCACTGGATTACCTA 3191
Query 158054 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103
| | || || || | ||||| |||| |||||||| || |||||||||
Sbjct 3192 TGTCTAATGCTTCGTTGTTAGACGAAGGTACTGCAGCTGCTGAAGCAATG 3241
Score = 98.7 bits (108), Expect = 1e-15
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
|||||||||||| |||| ||||| || || |||||||||||||| || || || || ||
Sbjct 3578 CAAAGGTTTGGTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCGTTTTTGGCTACTTCA 3637
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560
| |||||||||| | ||| ||||| || ||| | | || ||| || ||| | |
Sbjct 3638 CAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCCTTTG 3695
Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620
| || ||| | | || | |||||||| || |||||||| || || || ||||
Sbjct 3696 GGAAGCCAGCTCTTCGTATGGCGATGCAGACTAGGGAACAGCATATTAGGAGGGATAAAG 3755
Query 158621 CAACCAGTAACATCTGCACAGCACA 158645
| || || |||||||| || || ||
Sbjct 3756 CCACTAGCAACATCTGTACTGCTCA 3780
>seq165026
Length=1563
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/111 (79%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
||| || ||||| || ||||| || | || ||||| ||||||||||| |||||||||||
Sbjct 848 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 907
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAAAACATCTCACACCATTT 159801
|||||||| | ||||| |||||||| ||| ||||| | ||||||||
Sbjct 908 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGC--AACATTTGGCACCATTT 956
>seq9459
Length=1126
Score = 86.0 bits (94), Expect = 7e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 135006 CATCCTACACAAAAACCAGTTCCTGTATTGGAGTGGTTGATAACAACATTTTCTAATGAA 135065
||||| || || ||||| ||||| || | || | ||||| | || | | ||| |||
Sbjct 786 CATCCCACCCAGAAACCGGTTCCACTACTTGAATACTTGATTAAGACGTATACTAGTGAG 845
Query 135066 GGTGATACTGTATTAGACAACTGCATGGGGTCTGGTTCTACAGGTGTCGCAGCAGTCAAA 135125
|| || || || | || ||||||||||| |||||| ||| || || || || |||||
Sbjct 846 GGAGAGACAGTCCTTGATAACTGCATGGGTTCTGGTAGTACTGGCGTAGCCGCTGTCAAT 905
Query 135126 CTTAACAGAAAGTTTATAGGTATTGACACTGATGAAAAATATGTTACAAT 135175
|| |||||| ||| || || || || ||||| |||||| ||| |||
Sbjct 906 CTAAACAGAGCGTTCATTGGCATGGAATTAGATGATAAATATTTTAAAAT 955
>seq249645
Length=476466
Score = 82.4 bits (90), Expect = 9e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 156608 GTCAATATTCTTGAAGGCATTAGGTTCTATGTCTCCTTCGCTTGCTCGTTTGCGTTTGGT 156667
||||| | || |||| |||| | ||||||||||| || ||||||||||||||||||| |
Sbjct 268785 GTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCT 268844
Query 156668 GAACTCAAAGTTATGGAAGG 156687
|| | |||| | ||||||||
Sbjct 268845 GAGCGCAAATTGATGGAAGG 268864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 586086903174080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |