Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 605 3e-168
seq218717 143 3e-29
>seq28607
Length=83266
Score = 605 bits (670), Expect = 3e-168
Identities = 719/984 (73%), Gaps = 0/984 (0%)
Strand=Plus/Minus
Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156
||| | ||||||||| | || ||||| || | || ||||| || ||| |||||||||||
Sbjct 1493 TGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1434
Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216
|| || | | ||||| | ||| || ||||| ||| | | ||||||||| || ||
Sbjct 1433 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 1374
Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276
|| |||||||| || ||||| ||| |||| || || | || || ||||| || || ||
Sbjct 1373 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 1314
Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336
||||| || ||||| ||||| ||||||||| | || || || || |||||||||||
Sbjct 1313 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCT 1254
Query 167337 GCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396
||| || | || || ||| | ||||| || ||||||| |||| | ||| | |||||
Sbjct 1253 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 1194
Query 167397 CTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATG 167456
| |||| | | ||||||||||||||||||||||| || |||||| ||||||
Sbjct 1193 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1134
Query 167457 CGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTC 167516
||||| ||||| ||||||||| || ||||| || || || ||| ||||||| ||| |
Sbjct 1133 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTG 1074
Query 167517 GTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACA 167576
|||| || | |||||||| ||| ||||| | |||||||| || |||||||||||
Sbjct 1073 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 1014
Query 167577 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATG 167636
||||||| ||| |||| ||||| || ||||||||||| || |||||||| || || |||
Sbjct 1013 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 954
Query 167637 CTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTT 167696
| || || ||||| ||||||||||| || || || ||||| ||||| ||||| ||||
Sbjct 953 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTA 894
Query 167697 ACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTC 167756
|| ||| || | | |||||||| |||| ||| || || | |||||||| |||
Sbjct 893 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTC 834
Query 167757 GGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 167816
|| || |||||||| || || ||||| || |||||||||||||| || || || |||||
Sbjct 833 GGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 774
Query 167817 TTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCT 167876
|||||||| || |||||||| || || || | || |||||||| || || |||||
Sbjct 773 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 714
Query 167877 GTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGT 167936
|| || ||||| |||| |||||||| || |||
Sbjct 713 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGT 654
Query 167937 TTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGAC 167996
||||| |||||||| || | |||||||| || ||| | ||||||||| ||
Sbjct 653 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 594
Query 167997 GTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 168056
| | ||||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 593 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 534
Query 168057 CCTCTCGACCTTGCTGCTGCTGAG 168080
||||| ||||| ||||||| ||||
Sbjct 533 CCTCTAGACCTAGCTGCTGTTGAG 510
Score = 592 bits (656), Expect = 2e-164
Identities = 734/1002 (73%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554
||||||||| | |||| || ||||||||||| ||||||||||| || | || |||
Sbjct 32416 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32475
Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614
|| ||| ||| | ||| | || |||||| | || || || | || || || |||
Sbjct 32476 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32535
Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674
|||||||| || ||||| ||||||||| | || || || ||| | || || || |||
Sbjct 32536 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 32595
Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734
||||| || || | | | |||||| | || | || ||||||||||| ||||||
Sbjct 32596 TCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32655
Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794
|| ||||| | ||||||||| | || || || ||||||||||| || ||||||||
Sbjct 32656 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 32715
Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853
|||||||| |||| ||||| ||| | ||||| |||||||| || || || || | |
Sbjct 32716 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-T 32774
Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913
|| || || ||||| || || ||||||||||| || |||||||||||| ||||| ||
Sbjct 32775 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 32834
Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973
|| || || ||||||||||| ||||||| || || || ||| || || | || ||
Sbjct 32835 AATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 32894
Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033
|| |||||| | ||||| | ||||| || ||||| |||||| |||| |||||||||||
Sbjct 32895 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 32954
Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093
|||||| || || ||| | |||| | || |||| | || |||||||||| ||| ||
Sbjct 32955 GATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGT 33014
Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153
||| |||||| | | | |||||||||| |||||||| ||| || ||| || ||
Sbjct 33015 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33074
Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213
||| | || || || ||||||||||| || || ||||| || ||||| || ||||||||
Sbjct 33075 TCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 33134
Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273
|||| || ||||| | ||||| |||||||||||| | ||||| || || | ||
Sbjct 33135 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 33194
Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333
| | |||| ||| | | || | | || || ||| | ||||| ||||| ||||||||
Sbjct 33195 TTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTT 33254
Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393
|||||||| || ||| | ||||| |||||||| || |||||||| ||||| || || ||
Sbjct 33255 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 33314
Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453
|| || || ||||||||| ||||||| ||| | || || ||||| |||||||| ||
Sbjct 33315 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33374
Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495
| || | ||||||||||| || || || || || || || ||
Sbjct 33375 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416
>seq218717
Length=448
Score = 143 bits (158), Expect = 3e-29
Identities = 164/219 (75%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474
|||||| |||||||||||||||| || |||| ||||||||||| ||||| ||||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 167475 GCATACTCTGCTCCAGTC-GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 167533
||||| || ||||| || || || || || ||| ||| | | ||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 167534 AGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGT 167593
||| ||| | | | | |||||||| || |||||| |||| ||||||| || ||||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 167594 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCA 167632
||||| || ||||||||||| || |||||||| || ||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558735373067200
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