Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq28607 605 3e-168 seq218717 143 3e-29 >seq28607 Length=83266 Score = 605 bits (670), Expect = 3e-168 Identities = 719/984 (73%), Gaps = 0/984 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | || ||||| || | || ||||| || ||| ||||||||||| Sbjct 1493 TGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1434 Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216 || || | | ||||| | ||| || ||||| ||| | | ||||||||| || || Sbjct 1433 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 1374 Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276 || |||||||| || ||||| ||| |||| || || | || || ||||| || || || Sbjct 1373 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 1314 Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336 ||||| || ||||| ||||| ||||||||| | || || || || ||||||||||| Sbjct 1313 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCT 1254 Query 167337 GCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396 ||| || | || || ||| | ||||| || ||||||| |||| | ||| | ||||| Sbjct 1253 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 1194 Query 167397 CTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATG 167456 | |||| | | ||||||||||||||||||||||| || |||||| |||||| Sbjct 1193 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1134 Query 167457 CGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTC 167516 ||||| ||||| ||||||||| || ||||| || || || ||| ||||||| ||| | Sbjct 1133 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTG 1074 Query 167517 GTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACA 167576 |||| || | |||||||| ||| ||||| | |||||||| || ||||||||||| Sbjct 1073 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 1014 Query 167577 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATG 167636 ||||||| ||| |||| ||||| || ||||||||||| || |||||||| || || ||| Sbjct 1013 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 954 Query 167637 CTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTT 167696 | || || ||||| ||||||||||| || || || ||||| ||||| ||||| |||| Sbjct 953 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTA 894 Query 167697 ACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTC 167756 || ||| || | | |||||||| |||| ||| || || | |||||||| ||| Sbjct 893 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTC 834 Query 167757 GGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 167816 || || |||||||| || || ||||| || |||||||||||||| || || || ||||| Sbjct 833 GGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 774 Query 167817 TTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCT 167876 |||||||| || |||||||| || || || | || |||||||| || || ||||| Sbjct 773 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 714 Query 167877 GTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGT 167936 || || ||||| |||| |||||||| || ||| Sbjct 713 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGT 654 Query 167937 TTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGAC 167996 ||||| |||||||| || | |||||||| || ||| | ||||||||| || Sbjct 653 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 594 Query 167997 GTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 168056 | | ||||||||| || ||||||||||||||||| || |||||||||||||||||| Sbjct 593 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 534 Query 168057 CCTCTCGACCTTGCTGCTGCTGAG 168080 ||||| ||||| ||||||| |||| Sbjct 533 CCTCTAGACCTAGCTGCTGTTGAG 510 Score = 592 bits (656), Expect = 2e-164 Identities = 734/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| || ||||||||||| ||||||||||| || | || ||| Sbjct 32416 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32475 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| | || || || | || || || ||| Sbjct 32476 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32535 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| || ||||| ||||||||| | || || || ||| | || || || ||| Sbjct 32536 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 32595 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 ||||| || || | | | |||||| | || | || ||||||||||| |||||| Sbjct 32596 TCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32655 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || || || ||||||||||| || |||||||| Sbjct 32656 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 32715 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 |||||||| |||| ||||| ||| | ||||| |||||||| || || || || | | Sbjct 32716 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-T 32774 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || ||||| || || ||||||||||| || |||||||||||| ||||| || Sbjct 32775 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 32834 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || || ||||||||||| ||||||| || || || ||| || || | || || Sbjct 32835 AATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 32894 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || |||||| | ||||| | ||||| || ||||| |||||| |||| ||||||||||| Sbjct 32895 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 32954 Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093 |||||| || || ||| | |||| | || |||| | || |||||||||| ||| || Sbjct 32955 GATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGT 33014 Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153 ||| |||||| | | | |||||||||| |||||||| ||| || ||| || || Sbjct 33015 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33074 Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 ||| | || || || ||||||||||| || || ||||| || ||||| || |||||||| Sbjct 33075 TCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 33134 Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273 |||| || ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 33135 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 33194 Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333 | | |||| ||| | | || | | || || ||| | ||||| ||||| |||||||| Sbjct 33195 TTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTT 33254 Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393 |||||||| || ||| | ||||| |||||||| || |||||||| ||||| || || || Sbjct 33255 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 33314 Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453 || || || ||||||||| ||||||| ||| | || || ||||| |||||||| || Sbjct 33315 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33374 Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | || | ||||||||||| || || || || || || || || Sbjct 33375 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416 >seq218717 Length=448 Score = 143 bits (158), Expect = 3e-29 Identities = 164/219 (75%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 |||||| |||||||||||||||| || |||| ||||||||||| ||||| |||| Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 167475 GCATACTCTGCTCCAGTC-GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 167533 ||||| || ||||| || || || || || ||| ||| | | ||||| | ||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 167534 AGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGT 167593 ||| ||| | | | | |||||||| || |||||| |||| ||||||| || |||| Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 167594 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCA 167632 ||||| || ||||||||||| || |||||||| || || Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558735373067200