Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq28607 527 9e-145 seq218717 140 5e-28 seq249645 84.2 3e-11 >seq28607 Length=83266 Score = 527 bits (584), Expect = 9e-145 Identities = 702/974 (72%), Gaps = 6/974 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 ||||| |||||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 1481 ACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1422 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || || | | |||| ||||||| ||||| ||||| || ||||| || || Sbjct 1421 GCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 1365 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | || || ||| |||| ||| | | || || ||||| || || || ||||| || Sbjct 1364 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATT 1305 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| || || || || || || ||||| ||||||||||| ||| | ||| Sbjct 1304 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTT 1245 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||||| ||||| || || |||| |||| || | | ||||| | ||||| Sbjct 1244 GATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 1185 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 1184 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 1125 Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731 || |||||| || || || ||||| | ||||| ||| || ||| | | || ||| Sbjct 1124 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCA 1065 Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791 | ||||| || ||| ||||||| |||||| || ||||||||||| || ||||||| Sbjct 1064 ATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTT 1005 Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851 ||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1004 ATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTA 945 Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911 |||||||| ||||| || || | || ||| ||||| ||||| | || || ||| | Sbjct 944 GCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 885 Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 | ||||| || || || || | |||||| || | |||||||| ||||||||||| Sbjct 884 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAA 825 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| |||||||| |||||||| || ||||| ||||| || | ||||||||||| Sbjct 824 GAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 765 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 || ||||||||| || | | | || |||||| | || || | || || | || Sbjct 764 GCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGT 705 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 || ||| ||||| | ||| | || ||||| |||||||| || |||||||| ||| Sbjct 704 ATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTC 645 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| || || || || || |||||| ||||||||| || || ||||| Sbjct 644 AACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAAC 585 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || |||||||||||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 584 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGAC 525 Query 216272 TTGGCTGCTGCTGA 216285 | ||||||| ||| Sbjct 524 CTAGCTGCTGTTGA 511 >seq218717 Length=448 Score = 140 bits (154), Expect = 5e-28 Identities = 156/207 (75%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | |||||| | |||||||| |||||| || || || | Sbjct 213 AGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTC 154 Query 215694 CTGTAT-CTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCT 215752 |||| | | ||||| ||| || ||| | | |||||| | ||||| || ||| | | Sbjct 153 CTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTT 94 Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812 ||| |||||| || ||||||||| | || ||||||| || |||| |||||||||||| Sbjct 93 AATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAG 34 Query 215813 CACAACATTCTGATGCACCCATTCCAC 215839 ||||||||||| ||||||||||| ||| Sbjct 33 CACAACATTCTTATGCACCCATTTCAC 7 >seq249645 Length=476466 Score = 84.2 bits (92), Expect = 3e-11 Identities = 179/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 172863 GCCATCGGTCGCTATGTCGCTCAAAGGGCTGGTATTGGTATCAACGCAGGCCGCATCCGT 172922 ||||||| |||||||| | || | |||||||| || ||||||||||| || |||||| Sbjct 264664 GCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGT 264723 Query 172923 GGGATCAACAGTAAAATCAGAGGCGGAGAAGTACAGCACACTGGCGTTGTTCCGTTTCTC 172982 | | || ||| | ||||| |||| |||||| |||||| | |||| ||| Sbjct 264724 GCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTAT 264783 Query 172983 AAAAAATTTGAATCGACTGTCAGATGCTGCACTCAAAATGGCATCAGAGGTGGATCAGCT 173042 ||| || || || | || | ||||||| | ||| |||| | | || || | || Sbjct 264784 AAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCG 264843 Query 173043 ACGGTCCACTTTCCAATCTGGCACCAAGAAATAGAGGACATT-TTAGTTCTCAAAAACAA 173101 ||| | || ||| | ||||| |||| | || | |||| | || |||||||| || Sbjct 264844 ACGTTGTTCTACCCACTATGGCATTTAGAAGTTGA-GTCATTACTGGTACTCAAAAATAA 264902 Query 173102 CAAAGGAACCGAAGATAACCGTGTC 173126 | || ||||| ||||||||| Sbjct 264903 CCGCGGTGTTGAAGACAACCGTGTC 264927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742592766677440