Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 527 9e-145
seq218717 140 5e-28
seq249645 84.2 3e-11
>seq28607
Length=83266
Score = 527 bits (584), Expect = 9e-145
Identities = 702/974 (72%), Gaps = 6/974 (1%)
Strand=Plus/Minus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371
||||| |||||| | ||| |||| ||||||||||| | ||||| ||| | | | |
Sbjct 1481 ACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1422
Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431
||| || || || | | |||| ||||||| ||||| ||||| || ||||| || ||
Sbjct 1421 GCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 1365
Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491
|| | || || ||| |||| ||| | | || || ||||| || || || ||||| ||
Sbjct 1364 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATT 1305
Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551
| |||| ||| || || || || || || ||||| ||||||||||| ||| | |||
Sbjct 1304 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTT 1245
Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611
|| |||||||| ||||| || || |||| |||| || | | ||||| | |||||
Sbjct 1244 GATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 1185
Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671
| || || || | ||||||||||| || | | | |||||| | ||||||
Sbjct 1184 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 1125
Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731
|| |||||| || || || ||||| | ||||| ||| || ||| | | || |||
Sbjct 1124 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCA 1065
Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791
| ||||| || ||| ||||||| |||||| || ||||||||||| || |||||||
Sbjct 1064 ATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTT 1005
Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851
||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1004 ATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTA 945
Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911
|||||||| ||||| || || | || ||| ||||| ||||| | || || ||| |
Sbjct 944 GCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 885
Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971
| ||||| || || || || | |||||| || | |||||||| |||||||||||
Sbjct 884 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAA 825
Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031
|| ||||| |||||||| |||||||| || ||||| ||||| || | |||||||||||
Sbjct 824 GAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 765
Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091
|| ||||||||| || | | | || |||||| | || || | || || | ||
Sbjct 764 GCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGT 705
Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151
|| ||| ||||| | ||| | || ||||| |||||||| || |||||||| |||
Sbjct 704 ATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTC 645
Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211
||||| || || || || || |||||| ||||||||| || || |||||
Sbjct 644 AACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAAC 585
Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271
| || |||||||||||||| ||||| || ||||| |||||||||||||| |||||
Sbjct 584 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGAC 525
Query 216272 TTGGCTGCTGCTGA 216285
| ||||||| |||
Sbjct 524 CTAGCTGCTGTTGA 511
>seq218717
Length=448
Score = 140 bits (154), Expect = 5e-28
Identities = 156/207 (75%), Gaps = 1/207 (0%)
Strand=Plus/Minus
Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693
||||||||||| || | | |||||| | |||||||| |||||| || || || |
Sbjct 213 AGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTC 154
Query 215694 CTGTAT-CTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCT 215752
|||| | | ||||| ||| || ||| | | |||||| | ||||| || ||| | |
Sbjct 153 CTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTT 94
Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812
||| |||||| || ||||||||| | || ||||||| || |||| ||||||||||||
Sbjct 93 AATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAG 34
Query 215813 CACAACATTCTGATGCACCCATTCCAC 215839
||||||||||| ||||||||||| |||
Sbjct 33 CACAACATTCTTATGCACCCATTTCAC 7
>seq249645
Length=476466
Score = 84.2 bits (92), Expect = 3e-11
Identities = 179/265 (68%), Gaps = 2/265 (1%)
Strand=Plus/Plus
Query 172863 GCCATCGGTCGCTATGTCGCTCAAAGGGCTGGTATTGGTATCAACGCAGGCCGCATCCGT 172922
||||||| |||||||| | || | |||||||| || ||||||||||| || ||||||
Sbjct 264664 GCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGT 264723
Query 172923 GGGATCAACAGTAAAATCAGAGGCGGAGAAGTACAGCACACTGGCGTTGTTCCGTTTCTC 172982
| | || ||| | ||||| |||| |||||| |||||| | |||| |||
Sbjct 264724 GCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTAT 264783
Query 172983 AAAAAATTTGAATCGACTGTCAGATGCTGCACTCAAAATGGCATCAGAGGTGGATCAGCT 173042
||| || || || | || | ||||||| | ||| |||| | | || || | ||
Sbjct 264784 AAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCG 264843
Query 173043 ACGGTCCACTTTCCAATCTGGCACCAAGAAATAGAGGACATT-TTAGTTCTCAAAAACAA 173101
||| | || ||| | ||||| |||| | || | |||| | || |||||||| ||
Sbjct 264844 ACGTTGTTCTACCCACTATGGCATTTAGAAGTTGA-GTCATTACTGGTACTCAAAAATAA 264902
Query 173102 CAAAGGAACCGAAGATAACCGTGTC 173126
| || ||||| |||||||||
Sbjct 264903 CCGCGGTGTTGAAGACAACCGTGTC 264927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742592766677440
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