Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 636 2e-177
seq218717 127 2e-24
seq249645 122 1e-22
>seq28607
Length=83266
Score = 636 bits (704), Expect = 2e-177
Identities = 724/969 (75%), Gaps = 6/969 (1%)
Strand=Plus/Minus
Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880
|||||||| || | || ||||||||||| |||||||||| || | ||| | |||||
Sbjct 1475 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1416
Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940
| ||| || | || ||| | || || ||||| || ||||| || ||||| || |||
Sbjct 1415 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1356
Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000
|| || |||| || || | || || ||||| || || || ||||| || | || |
Sbjct 1355 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 1296
Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060
|| || |||||| | || || ||||| |||||||||||||| || ||||||| |||
Sbjct 1295 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 1236
Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCC 182120
|| || ||||| ||||||| |||| ||||| | ||||| | | || | || ||
Sbjct 1235 CTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--TGTA-GCT 1179
Query 182121 T---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177
| | ||||| ||||||||||||||| || ||| | ||||||||||| ||||| |
Sbjct 1178 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1119
Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237
|| ||||| || ||||| || || || ||| ||||||| ||||| |||| || | |||
Sbjct 1118 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGT 1059
Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297
||||| || || |||| ||||| || |||||||| || || ||||||| |||| |
Sbjct 1058 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 999
Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357
|| ||||| ||||||||||||||||||||||| || || |||||||| |||||||| |||
Sbjct 998 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 939
Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417
|||||||| || || || |||||||| ||||| ||||| ||||| || ||| | ||
Sbjct 938 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 879
Query 182418 CGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 182477
| || || || || | || || || | |||||||| ||||| |||||||||||
Sbjct 878 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAA 819
Query 182478 ACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCA 182537
|| || ||||| || || || ||||| || || || || |||||||||||||| ||
Sbjct 818 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 759
Query 182538 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGG 182597
|||||||| || ||||| || || |||||| | || || ||||| || || || || |||
Sbjct 758 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 699
Query 182598 TTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 182657
|| || || | ||| | ||| ||||| |||||||| || |||||||| ||||||||
Sbjct 698 TTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 639
Query 182658 TCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCT 182717
|| | ||||| |||| || ||||| |||| |||||||| ||| | | |||||||||
Sbjct 638 TCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 579
Query 182718 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCT 182777
||||||||||||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct 578 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 519
Query 182778 GCTGCTGAG 182786
|||| ||||
Sbjct 518 GCTGTTGAG 510
Score = 587 bits (650), Expect = 9e-163
Identities = 738/1010 (73%), Gaps = 6/1010 (1%)
Strand=Plus/Plus
Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252
||||||||| | | || ||||| || ||||| || |||||||| || | || ||
Sbjct 32416 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32475
Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 32476 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32535
Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372
||||| |||||| | ||| ||||||| | |||||| || ||| | || || || ||
Sbjct 32536 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 32595
Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432
||||| |||||| | | | | |||||| | ||||||| ||||||||||| | |||
Sbjct 32596 TCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32655
Query 183433 GGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGT 183492
|| || ||| || ||||| ||| | || || || ||| |||||| || ||||||||
Sbjct 32656 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 32715
Query 183493 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATC 183552
|| || || | || ||||| ||| | || || |||||||||||||| | || |
Sbjct 32716 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTG 32775
Query 183553 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTT 183612
|| ||||| ||||| || || ||||||||||| |||||||||||||| ||| |||||
Sbjct 32776 CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTA 32835
Query 183613 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 183672
|| |||||||||||||| ||| ||||||||||| |||||||| || ||||| || ||
Sbjct 32836 ATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 32895
Query 183673 TTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729
||| ||| |||| || |||| ||||||| || || ||||| || ||||| || |||
Sbjct 32896 TTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCAT 32952
Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789
||||||||||| || ||| |||| || | || || || | ||||| ||||||| ||
Sbjct 32953 ATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACT 33012
Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849
||||| ||||| || | ||||||||| || ||||| |||||| || ||| | |
Sbjct 33013 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33072
Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909
||||||| ||||| || ||||| ||||| || || || || || ||||||||||||||
Sbjct 33073 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33132
Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969
|||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || |
Sbjct 33133 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 33192
Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 184029
||| | ||| | | || |||| | | || || ||| | || || ||||| |||||
Sbjct 33193 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGAC 33252
Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089
|| || || || ||| | ||||| |||||||| ||||||||||| ||||| || ||
Sbjct 33253 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 33312
Query 184090 AACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAG 184149
|| || ||| | || ||||| | ||||| ||| | || || ||||| || |||||
Sbjct 33313 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33372
Query 184150 AATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199
|| ||||||| || |||||||| |||| | || || ||||||| |||
Sbjct 33373 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 33422
>seq218717
Length=448
Score = 127 bits (140), Expect = 2e-24
Identities = 161/220 (73%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 182121 TACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTA 182180
|| ||| | ||||||||||||||| || | | ||||||||||| ||||| |||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 182181 GCATACTCTGCTCCAGTC-GCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCA 182239
||||| || ||||| || || || || || ||| ||||| | ||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 182240 AGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGT 182299
||| || | ||| ||||| || |||||||| | || ||||||| ||| | ||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 182300 TTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCAC 182339
||||| ||||||||||||||||||||||| || || |||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq249645
Length=476466
Score = 122 bits (134), Expect = 1e-22
Identities = 206/295 (70%), Gaps = 5/295 (2%)
Strand=Plus/Plus
Query 154147 CTAGAAGGCATCCGTTTCTACGTATCGTTTGCTTGTTCGTTCGCTTTCGGTGAAAACAAA 154206
||||||| ||| |||||||| || ||||||||||| ||||| || || | ||| ||||
Sbjct 268794 CTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAA 268853
Query 154207 CTGATGGAAGGCAATGCTAAGATCATTTCTCTCATTGCGAGAGATGAATCGCAGCACATG 154266
|||||||||| ||||| || |||||| ||||| || | |||||| ||| ||| ||
Sbjct 268854 TTGATGGAAGGTAATGCCAAAATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTG 268913
Query 154267 ACCATCACTCAGAACATTCTAAA---CAAGTGGAAGCAGGGCGATGACCCTGACATGGTT 154323
|| || ||| | || ||||| || | | || | || || ||||| |||||
Sbjct 268914 ACAGGTACGCAGCATATGCTAAACCTCATGCGCAACGGTCGTGACGATCCTGAGATGGTC 268973
Query 154324 GAGATTGCACAAGA-AGAAGAGAAGAACGTCTACGAGATGTTCAATAAATGTGTTGAAGA 154382
|||||||| ||| | || ||| || | || || ||| ||| || ||| |
Sbjct 268974 GAGATTGCCGCAGAGTGTTTCGATGAAAGTAT-TGAAATCTTCCGCAAAGCTGCTGAGCA 269032
Query 154383 AGAAGTAATTTGGGCAGACTACTTGTTCCGTGATGGTTCAATGATTGGTCTGAAC 154437
|||| | ||||||| ||| ||||| ||||| || ||||||||||| |||
Sbjct 269033 AGAAAAAGAATGGGCAGGCTATCTGTTCAAAGATGGCTCGATGATTGGTCTAAAC 269087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 609652721266400
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