Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq28607 661 0.0 seq218717 172 6e-38 >seq28607 Length=83266 Score = 661 bits (732), Expect = 0.0 Identities = 728/965 (75%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCT 164847 || |||||||| | || ||||| |||||| | |||||||| || ||| ||| || Sbjct 1475 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1416 Query 164848 ACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907 | ||| |||||| |||||||| |||||||| || || || ||||||||||||||| Sbjct 1415 TCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1359 Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967 |||||||| | || ||||| | ||||| ||||| || || || ||||| | |||| Sbjct 1358 GAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCT 1299 Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAA 165027 ||||| || || || | || || || || || |||||||||||| || | |||||| Sbjct 1298 ACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 1239 Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087 ||| | |||||||| |||||||| | | |||| | ||||| | | ||||||||| Sbjct 1238 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1179 Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 165147 || || |||||||||||||||||||| || ||| || |||||||||||||||||| Sbjct 1178 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1119 Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207 || |||||| || ||||| || ||||| | || |||||| || |||| || | ||| Sbjct 1118 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGT 1059 Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267 ||||| ||||| ||||||||||||||||| || |||||||||||||| |||| |||| | Sbjct 1058 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 999 Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || ||||| || || || |||||||||||||| || || |||||| | || || ||||| Sbjct 998 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 939 Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTC 165387 |||||||| || || || || |||||||||||| | || ||||| | || Sbjct 938 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 879 Query 165388 CGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447 | || || || |||| || | || | ||||| || || |||||||||||||| Sbjct 878 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAA 819 Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507 || || ||||| || ||||| || || || || || || | || |||||||| || Sbjct 818 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 759 Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGG 165567 ||||||||||| ||||| | || |||||| | || || ||||| ||||| ||||| ||| Sbjct 758 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 699 Query 165568 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 165627 || |||||| | ||| ||||||||||||| |||||||| || |||||||| |||||||| Sbjct 698 TTTACTGCTTTAGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 639 Query 165628 TCTATTGTTGATAGTC-AGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGC 165686 || | |||||||||| || || | || |||||||||||| || | |||||||| Sbjct 638 TCAGTAGTTGATAGTCAAGGAC-GTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 580 Query 165687 TGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGC 165746 | || |||||||||||||||||||| ||||| |||||||||||||| || ||||| || Sbjct 579 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 520 Query 165747 TGCTG 165751 ||||| Sbjct 519 TGCTG 515 Score = 576 bits (638), Expect = 2e-159 Identities = 720/987 (73%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || ||||||||||| ||||||||||| || | || |||| ||| ||| | ||| Sbjct 32434 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32493 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || ||||||||||||||| | || Sbjct 32494 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 32553 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| | || ||| || ||| | || || || ||||| ||||| || || | Sbjct 32554 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGT 32613 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430 | | |||||| | | | || ||||||||||| || ||||| ||||| | ||| Sbjct 32614 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 32673 Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490 || ||| | || || || ||||| ||||||||||||||||| ||||| || |||| ||| Sbjct 32674 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGT 32733 Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATC 166550 || ||| | || || |||||| | ||||| || | || || || ||||||||| Sbjct 32734 TTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATC 32793 Query 166551 GCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAA 166610 || || |||||||| |||||||| || ||| |||||| || || || || ||||||||| Sbjct 32794 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTGGGTCAA 32853 Query 166611 TCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTC 166670 || ||||||| || || || ||| || || | || || || |||||| |||| || Sbjct 32854 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 32913 Query 166671 CTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATT 166730 | ||||| || || || |||||| |||||||||||||||||||||| || || ||| | Sbjct 32914 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 32973 Query 166731 CTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAA 166790 || || | || |||| | || || ||||||| ||| ||||| || ||| | | | || Sbjct 32974 CTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 33033 Query 166791 GATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTAT 166850 |||||||| |||||||| ||| || || || | ||||||| |||||||| ||| Sbjct 33034 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 33093 Query 166851 TCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAG 166910 |||||||| || || ||||||| |||||| || ||||| || |||| ||| ||||| Sbjct 33094 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 33153 Query 166911 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATC 166970 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 33154 CGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTT 33213 Query 166971 GGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGG 167030 || | | || || ||| | ||||| ||||| |||||||| |||||||| ||| | | Sbjct 33214 GGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 33273 Query 167031 GCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGT 167090 ||||| || ||||| || ||||| || |||||||| || || ||||| || || || ||| Sbjct 33274 GCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 33333 Query 167091 ATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAG 167150 || ||| |||||||||| || ||||| |||||||| | | |||||||||| ||| Sbjct 33334 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 33393 Query 167151 GTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||| || | || |||||||| ||| Sbjct 33394 GTTCTACCACGTGGAAACGCTCTTTAA 33420 >seq218717 Length=448 Score = 172 bits (190), Expect = 6e-38 Identities = 180/235 (77%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 165076 ATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGT 165135 || |||||| |||| || ||| |||||||||||||||| || | || ||||||||| Sbjct 241 ATTGGTGTAACTTGTTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGT 182 Query 165136 CCTTGGATTTGCGTAGCATATAGCGCACCTGTC-GCTGCTGCTGCCGCAGTTTTCCTGGT 165194 ||||||||| || |||||| || ||||| || |||||| | |||||| || | Sbjct 181 CCTTGGATTGTTGTTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGAT 122 Query 165195 CTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTT 165254 ||||| | |||||||| ||||| | | ||||||||||||| || |||||| ||||||| Sbjct 121 TTATCCAATTGGTCAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTT 62 Query 165255 TAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCAC 165309 |||| ||| | || ||||| || || || |||||||||||||| || || ||| Sbjct 61 CAACTTTATTATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561777975646720