Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq249645 96.9 3e-15 seq249537 87.8 2e-12 >seq249645 Length=476466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 269/405 (66%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 54213 GTTGATCTGAATACCATAGTCGATACGGCGTTCACGGTTCTCTTCAAGACCACGGTTGTT 54272 ||| | ||| | || ||||| ||| | || ||||||| ||||||| ||| ||||| || Sbjct 264957 GTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATT 264898 Query 54273 CTTCAGGACCACAACATCA-TCAAATTGATAATGCCAGATAGGGATATAGCAA-GTTGCT 54330 || || |||| | || | |||| || ||||||| | ||| || | ||| || || Sbjct 264897 TTTGAGTACCAGTA-ATGACTCAACTTCTAAATGCCATAGTGGG-TAGAACAACGTCGCA 264840 Query 54331 GATCCGCCACGAATACCGCCTTGAGAGCAAGACTTTAATGCCCCAGTCAGATATTTTATG 54390 | |||||||| | || ||||| ||||| | ||||| | || | | | ||||| Sbjct 264839 GCACCGCCACGTACGCCACCTTGTGAGCAGCA-TTTAACGGCCGTTTGGAACAATTTATA 264781 Query 54391 AAA-GGAACCAGGCCTGTGTGCACCATTTCACCTTTTCGGATAGGGCTACCGATGCCACG 54449 ||| |||| ||| || ||| |||||| |||||||||||||| | | |||| Sbjct 264780 AAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACG 264721 Query 54450 AATTGCTCCAACATCAAATCCGATCCCAGCGCGTTTGGATACATAATCAACAATACTTTT 54509 || || | | | ||||| ||||| || | || ||||| || || | Sbjct 264720 GATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCT 264661 Query 54510 GGCTGTAGCATTGATTGAGTCCAAAGTGTCACCGGTTTTGATAAGAACACAAGAACTGAA 54569 | || || ||||| ||||| || | ||||| || ||| | || || || || || Sbjct 264660 AGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAA 264601 Query 54570 TTGGCGGGTTGGGGTACGAACGCCGGACATGATGGGTGTTGGAAG 54614 || || | ||| ||||| || || |||||||| || ||||| || Sbjct 264600 CTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAG 264556 >seq249537 Length=1253 Score = 87.8 bits (96), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 137238 TAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAGTCCAGCCA 137297 |||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| || Sbjct 4 TAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAATCCAG-CA 62 Query 137298 GGG 137300 ||| Sbjct 63 GGG 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500788783688480