Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq117562 107 1e-18 seq78792 102 5e-17 seq54724 102 5e-17 seq210337 96.9 2e-15 seq153189 93.3 3e-14 seq66861 91.5 1e-13 seq50902 87.8 1e-12 seq204555 86.0 4e-12 seq91578 84.2 1e-11 seq214945 82.4 5e-11 >seq117562 Length=2070 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||| | || || ||||| ||||||||||| | Sbjct 1229 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1170 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || |||||||| ||||| || || | ||||||||| || | || Sbjct 1169 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1110 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| |||||||| ||||| |||||| | || | ||| | ||| || Sbjct 1109 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1050 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| |||||||| ||||| |||||||| ||||| || || ||||| Sbjct 1049 TCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || ||||||||||| || ||||| | | | | ||| |||| || Sbjct 1895 ACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGCTAAGGTGCGTCCATCTTCG 1836 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || |||| ||||| || | || | ||| |||||||| | Sbjct 1835 AGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGA 1776 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGT 34948 ||||| ||||| || |||| || | ||| || |||||| || | ||| || || Sbjct 1775 ATCTTAGCCTTGAC--AT--TATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGT 1720 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | ||||||||||||||| ||||| Sbjct 1719 CTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 1687 >seq78792 Length=14290 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| || || | || ||| || |||| || ||| ||||| ||||| || || | Sbjct 11670 TCCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGC 11611 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || ||| | | || |||| |||||||||||||| || | ||||||||||| | || Sbjct 11610 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGG 11551 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | || |||||||| |||||| ||| || || | ||||| | ||| | | Sbjct 11550 AATTCCTTCCTTGTCTTGGATCTTCGCTTTCAC--AT--TGTCGATTGTGTCCGAAGATT 11495 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | |||||| || || ||||| || || ||||| ||||||||||| Sbjct 11494 CAACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 11443 >seq54724 Length=7877 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||| | ||||||||||| ||| ||| ||||| ||||| || |||| | | | || | Sbjct 1634 CCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCCAAGGTACGGCC 1575 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| |||| ||| |||||||| || || | || ||||| || | || | || ||||| Sbjct 1574 ATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTT 1515 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 || |||||| || ||| | |||| ||| || || |||| ||| || Sbjct 1514 ATCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGGGTGAT 1455 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| ||||||||||||||||| Sbjct 1454 AGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || ||||||||||| || ||||| | || ||| | || Sbjct 2087 CAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCCGTC 2028 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || ||||||||||| || | || |||||||| | || | || || ||||| Sbjct 2027 CTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTC 1968 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||| ||| | || | || | |||||| |||| ||| ||||| Sbjct 1967 CTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGT 1908 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || | ||||| ||||||||||||||| Sbjct 1907 TTTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874 >seq210337 Length=1863 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||| || ||||| || |||| ||| | ||| |||| || Sbjct 1060 ACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCAAGAGTACGTCCATCTTCA 1119 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || |||| ||||| || | || | || || ||||| Sbjct 1120 AGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGG 1179 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTC-ACCGGC---CTCAACATCGACGGTTATGGT 34948 ||||| ||||| || ||||||| | ||| |||||| || | || ||||| Sbjct 1180 ATCTTAGCCTTGAC--AT--TATCGATCGTATCGGAGCTCTCAACCTCAAGAGTAATGGT 1235 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || ||||||||||| |||||||| |||||| Sbjct 1236 TTTCCCAGTGAGAGTCTTGACAAAGATTTGCATA 1269 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | ||| |||| || | ||| || |||||||| Sbjct 850 TCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGTCCATCTTCTAACTGCTTACCGGCAAAG 909 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||| | || | ||||| ||||| ||||| |||||| || Sbjct 910 ATAAGTCTCTGCTGGTCCGGTGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGAC--AT 967 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || || | ||| || || | || ||||||||||| || || ||||| Sbjct 968 --TATCAATGGTGTCTGAGCTCTCCACCTCCAAAGTGATGGTTTTTCCGGTAAGGGTCTT 1025 Query 34967 CACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 1026 GACAAAGATCTGCATA 1041 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||| | || || ||||| ||||||||||| | Sbjct 1498 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1557 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || || ||||| ||||| || || | ||||||||| || | || Sbjct 1558 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1617 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| |||||||| ||||| |||||| | || | ||| | ||| || Sbjct 1618 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1677 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| |||||||| ||||| || || || ||||| || || ||||| Sbjct 1678 TCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || || || | || | | | |||| || ||||| || ||||| || Sbjct 1306 TCTTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAG 1365 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||| || | || | || |||||||| ||||| |||||| Sbjct 1366 ATAAGTCTTTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTA 1425 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || ||||| ||||| || |||||||| ||| Sbjct 1426 TCAATAGTATCTGAGCTCTCAACCTCAAGAGTGATGGTCTTTCCGGTCAGAGTCTTGACA 1485 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 1486 AAGATCTGCATA 1497 >seq153189 Length=17048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || || ||||||||||| ||||| | | | | ||| |||| Sbjct 14493 CAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGTCCATC 14434 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || |||||||| || || | || ||||| || | || | || |||||||| Sbjct 14433 TTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTGTC 14374 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTA 34944 ||||| ||| || || | ||||| | ||| || || || |||| ||| | Sbjct 14373 CTGGATCTTGGCTTTAAC--AT--TGTCGATCGTGTCCGAGCTTTCCACCTCGAGGGTGA 14318 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| ||||||||||| || ||||||||||| Sbjct 14317 TTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281 >seq66861 Length=20397 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | || | ||| | || || || ||||||||||| || Sbjct 17451 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAA 17392 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||||||||| || | || | || |||||||| |||||| ||||| Sbjct 17391 AATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATT 17332 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | ||||| |||| ||||| || || ||||| || || ||||| Sbjct 17331 GTCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCAC 17272 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 17271 GAAGATCTGCATCTT 17257 >seq50902 Length=6384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| |||||||||||||| ||||||| | | || |||| || Sbjct 4565 AACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCATCTTC 4506 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||||| ||||| ||||| | || ||||| | || | ||| || || || Sbjct 4505 GAGCTGTTTTCCCGCAAAGATTAGCCTCTGTTGGTCCGGAGGGATCCCTTCTTTATCTTG 4446 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947 ||||||| ||| || || | || || | ||| || || || || | || |||| Sbjct 4445 AATCTTCGTTTTCAC--AT--TGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTGATGG 4390 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||||| | |||||| || || |||||||| Sbjct 4389 TTTTACCCGTCAAAGTCTTGACGAATATCTGCAT 4356 >seq204555 Length=10983 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||||| | | || |||| || || ||||| || ||||| Sbjct 1300 TCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCATCTTCGAGTTGTTTCCCCGCAAAG 1359 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| | |||||||| | || | ||| || || || |||||| || || Sbjct 1360 ATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCTTGAATCTTTGCCTTTACATTG 1419 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | ||||||||||| || || || ||||| || Sbjct 1420 TCAATCGTGTCTGAGCTCTCAACTTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTAACG 1479 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 1480 AATATCTGCATA 1491 >seq91578 Length=16840 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| ||| ||||| ||||| ||||| | || | ||| | || || || ||| Sbjct 266 TGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGT 325 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 |||||||| || || | |||||| || || | || | || |||||||| ||||| Sbjct 326 TTTCCGGCGAAAATCAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTA 385 Query 34899 TGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||||| || | ||||| | ||| | ||||| |||| ||||| || || || Sbjct 386 GCCTTGAC--AT--TGTCGATCGTATCCGATGATTCAACCTCGAGCGTTATCGTCTTCCC 441 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| || || ||||| ||||||||||| || Sbjct 442 CGTTAGGGTTTTCACGAAGATCTGCATCTT 471 >seq214945 Length=15579 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTG-TGCTTTCTTTCTGAATGTTATAGTCCG- 34812 ||||| || ||||| | ||||||||| | | || | |||| || ||||| || || | Sbjct 5488 CCTCCTCTTAACCTGAGAACCAAGTGGAGAGCTGACTCCTTT-TGGATGTTGTAATCAGC 5546 Query 34813 -AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 |||| | || |||| ||||||||||| |||||||| || |||| || |||||| Sbjct 5547 CAAAG--TACGACCATCTTCCAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGGTCTGAA 5604 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || || || || || || ||||| |||||| | ||| | || | || Sbjct 5605 GGGACTCCTTCTTTCTCTTGGATCTTGGCCTTGACGTTTTCTACTGTGTCCGAGCTTTCG 5664 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| || |||||| || || | |||||||| || ||||| ||||| Sbjct 5665 ACCTCGAGGGATATGGTCTTGCCTTTAAGAGTCTTTACGAAGATTTGCAT 5714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323576319900384