Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq28607 654 0.0 seq218717 138 1e-27 seq244327 86.0 7e-12 >seq28607 Length=83266 Score = 654 bits (724), Expect = 0.0 Identities = 728/972 (75%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 532 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 591 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 592 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 651 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||||||||||| ||| | ||||| ||||||||| || || Sbjct 652 AAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 711 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| |||||| ||| Sbjct 712 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 771 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| ||||| || |||||||| |||||||| Sbjct 772 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGT 831 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| |||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 832 CCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 891 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 892 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 951 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 952 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 1011 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| ||||| || | || || Sbjct 1012 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 1071 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| ||| |||||||| ||||| || || |||||| ||||| ||| Sbjct 1072 ATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 1131 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 1132 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 1191 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||||| || || || ||||||||||| || | | Sbjct 1192 AAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGAT 1251 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | ||||||||| ||| | |||| | |||| Sbjct 1252 GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCA 1311 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 1312 CCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 1371 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884 ||||| ||||| || ||| ||| |||||| || || ||| | ||| || | | || Sbjct 1372 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG 1431 Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACC 84944 || || ||||| | | |||||||| |||| || | ||| || | |||| ||| | | Sbjct 1432 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATC 1491 Query 84945 CAATCACAGAAG 84956 || | ||||||| Sbjct 1492 CAGTTACAGAAG 1503 >seq218717 Length=448 Score = 138 bits (152), Expect = 1e-27 Identities = 188/261 (72%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 84410 GTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGT 84469 |||||| || |||||||| ||||| || || |||||||| |||| || ||||||| || Sbjct 7 GTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGT 66 Query 84470 TCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAG 84529 | ||||| || || ||||| |||| | | ||| ||||| || | ||||| | | Sbjct 67 ACAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAA 126 Query 84530 GAATACAGCAGATGCCGCTGCAA-CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCA 84588 ||| ||| || || ||||||| | ||||| || || |||||| ||||| ||||||| Sbjct 127 GAAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCA 186 Query 84589 TACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGA 84648 |||| |||| | ||||||||| ||||||| ||| ||| | | ||||||| | Sbjct 187 TACCCAGACATAAACTAAGTTCCCACTCACGACTCATATAACAAGTTACACCAATTTAAA 246 Query 84649 AGTGAAAGACAACAAGTTGAT 84669 |||| | |||| |||| || Sbjct 247 AGTGTAGAACAATTAGTTCAT 267 >seq244327 Length=1302 Score = 86.0 bits (94), Expect = 7e-12 Identities = 229/343 (67%), Gaps = 14/343 (4%) Strand=Plus/Plus Query 92801 TAATGATGTGAGTATAGGAACGTGAGTGAATCATTTCCATGAATCCCCACACTTCCATAC 92860 |||| || |||||||| |||||||||||||| ||||| || ||| ||| || | Sbjct 844 TAATAATATGAGTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCC 903 Query 92861 AAGATTCTAACTCAGGTAGAGAACAATAGGGAAGAAAGGCAA-GTGATGGTCCTCTACCT 92919 | | |||||| || || | |||| | || ||||| |||| || | || | ||| ||| Sbjct 904 AGGTTTCTAATTCCGGAATAGAAATAATTGGTAGAAAAGCAATGTTA-GGACTTCTTCCT 962 Query 92920 TGAACACTGTCCAACATCACCTGATACTTTAGATTAGATGTAAAGATGTGTTTT---TGT 92976 |||| | ||| || | ||||| |||| |||| ||| || |||||| ||| Sbjct 963 TGAATAGAGTCTAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGT 1022 Query 92977 TCTGGGCGGAGATTTTGATAATCTGATCTATCTTTTTGA-AGAGA--TACCTCTTCTGGA 93033 || | | | ||||||| ||||| |||||| | || ||||| || ||||| || Sbjct 1023 TCAG---GTAAATTTTGAAAATCTATTCTATC---TCGAGAGAGATCTATTTCTTCAGGT 1076 Query 93034 CGCCAGAAGAAACCTAGTTGAGTTTGTGTAAGTTTTTCAAAGAGAGGGTATTTATAGTCT 93093 | ||| || ||| ||||| ||| | | ||||||||| | | ||||| | | Sbjct 1077 CTCCAAAAAAAAGAGAGTTGTTTTTCAATTAATTTTTCAAAAATATTATATTTTTGCTGA 1136 Query 93094 AGGTATTGCTGAATACCTAGAGGTTGACCAAAGAACATTGGTT 93136 ||| | |||| | |||||| ||||| ||||| |||| Sbjct 1137 TCATATCGGGCAATATTGACAGGTTGTCCAAAAAACATAGGTT 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569365346230240