Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq146431 147 2e-30 seq205226 125 8e-24 seq100826 123 3e-23 seq191921 114 1e-20 seq231195 109 6e-19 seq161916 109 6e-19 seq151582 100 3e-16 seq164072 91.5 2e-13 seq5389 84.2 2e-11 >seq146431 Length=15796 Score = 147 bits (162), Expect = 2e-30 Identities = 398/599 (66%), Gaps = 15/599 (3%) Strand=Plus/Plus Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 |||||||| || |||||||| |||| || ||||||| |||||||| ||||| || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGA 19073 ||||| |||||||| ||||| | ||| || | |||||| || ||| || | | | || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240 Query 19074 AAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATC 19130 ||||| |||||||| || || ||||| || | || ||| || || | || ||| Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAG-ATC 4299 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 || ||||| ||| ||||| | ||| ||||| ||||| || ||||| || Sbjct 4300 C-----ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTC 4354 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 | | ||||||| | ||| | ||||||| | || | ||| | || | Sbjct 4355 GACTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAG 4414 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||| ||||| || ||||| ||||| || || || || ||||||||||| || | || Sbjct 4415 ACTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGC 4474 Query 19311 TTCTGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCAT 19369 ||| | | ||||| || ||| |||| | | |||||| || ||||| | Sbjct 4475 TTCGGAGACTTGTACATC-TGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGT 4533 Query 19370 CACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG 19429 || || || || || || | || ||||| || || || ||| || | ||| | Sbjct 4534 CAGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGA 4592 Query 19430 TATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488 | || ||| ||| |||| |||| |||||||||||| | ||||| || || || Sbjct 4593 TTTTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCT 4652 Query 19489 TCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 || ||||| || ||||| | ||| || | | || || || ||||| ||| ||||| Sbjct 4653 TCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq205226 Length=4968 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| ||| | || | | ||| || ||||||||| Sbjct 4507 CCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 4566 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || | |||||||||||| | || | ||||| ||| ||| Sbjct 4567 TTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGAA 4626 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || |||| ||| ||||||| ||| | |||||||||||| Sbjct 4627 ACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAATT 4686 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || |||||||| ||||| Sbjct 4687 CCCTCGATGCTATCATCCTTCATA 4710 >seq100826 Length=54576 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| || | || |||||||| ||| |||||||| ||| || | || | | Sbjct 29867 GTTCCTGAATTGAACAGAGTCGGAGATGCGTGAGTAAACCATCTCTGAGACATTAAATGA 29926 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || ||||| | || ||||| ||||| | ||| |||||||| | ||| || | ||| || Sbjct 29927 TAAGTTTCTACCACGGAATCAATATCTTCCTTG-TGTATACCAACAGAAACCCTCATCAA 29985 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| ||| ||||| ||||| || ||| |||| | Sbjct 29986 CATGTGTTGAGGCCTTTCAACAACTTTTCCTCGGATTTTTAAAAGGTACGATCTTTCAAG 30045 Query 48779 TGTTTTAAAACCAAAATAGTTGTAT 48803 |||||| || ||||| || | |||| Sbjct 30046 TGTTTTGAATCCAAAGTAATCGTAT 30070 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | | ||| || ||||||||| Sbjct 29540 CCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACCA 29599 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||||||||||||| | || | |||||| ||| ||| Sbjct 29600 TTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGAA 29659 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || |||| ||| ||||||| ||| | || ||||| || Sbjct 29660 ACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATATC 29719 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || |||||||| ||||| Sbjct 29720 CCCTCGATGCTATCATCCTTCATA 29743 >seq191921 Length=6033 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || ||||| || | ||| | ||||||| ||| | || | |||||||| ||||||||| Sbjct 4104 CCCCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAACATTGGAACAATACCA 4163 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | |||||||| || ||| ||||||||| | || | |||||| || |||| Sbjct 4164 TTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 4223 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| ||| | ||||||| ||| || || ||||| || Sbjct 4224 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 4283 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || || || || |||||| |||| | ||||| ||||| Sbjct 4284 CCCTCAATGCTGTCATCTTTCATGCAGATCAGAAAGCAACT 4324 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| || || | || |||||||||||| | |||||| ||| || | || | Sbjct 4445 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 4504 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||| |||| || |||| || ||||| | ||| || || || | || || | ||||| Sbjct 4505 ATAAGTTTTGATTGCAGAGTCAATATCATCCTTG-TGGATGCCAACAGCAACCCTCATTA 4563 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| || ||||||| ||| | | ||| || || |||||| | || | Sbjct 4564 GCATGTGTTGAGGCCTCTCAACAACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCAA 4623 Query 48778 ATGTTTTAAAACCAAAATA 48796 ||||| || ||||| || Sbjct 4624 GCGTTTTGAATCCAAAGTA 4642 >seq231195 Length=5996 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 3051 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 3110 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | ||||| || || ||| ||||||||| | || | |||||| || |||| Sbjct 3111 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 3170 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| ||| | ||||||| ||| || || ||||| || Sbjct 3171 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 3230 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 3231 CCCTCGATGCTGTCATCTTTCAT 3253 >seq161916 Length=396 Score = 109 bits (120), Expect = 6e-19 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||| ||| || || || || | ||| | | ||||| || ||| || ||| | ||| Sbjct 376 TCCTTGACTAATTGGTGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAATTC 317 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 |||||| ||||| || |||| |||||| | || |||||||||| || || || || | Sbjct 316 ACAACTAGCTTCTAACGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCG 257 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 || ||| | ||| |||| ||| | ||| |||||| || ||||||| Sbjct 256 TGATTCAGGTGAGCCAAATGGAAATCTCATCATTGAGAATAAATCTGCTAACCCTTGAAT 197 Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAA 47753 |||||||||||| || | ||| ||||||||||| Sbjct 196 ACCAATACCAATAGGACGATGTCTTTTATTAGAA 163 >seq151582 Length=319 Score = 100 bits (110), Expect = 3e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 47358 TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGAT 47417 |||| ||| |||| |||||||||||||||||||||||||||| |||||| || ||||| Sbjct 105 TATAAATTTGTTGTGTATGGTTCTATAGATTCATTATTTCCAAGAATTTGTGCTGTTGAA 46 Query 47418 GCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCAT 47460 || |||||||| | ||| | ||| || |||||| |||| || Sbjct 45 GCCGTAGGCATCGGTGCTAATAACAATGAATTTCTAACTCAAT 3 >seq164072 Length=359 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Minus Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 |||||||| | ||||||||| || |||| | |||| | || | ||||||| Sbjct 359 AGGACATTTACGAGGACACATTAAGCTCCAAGGTTGATCAGCCTCAACACGTCTCATAAA 300 Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277 | ||| |||||||||||||| | ||||||||| |||||| || ||||| ||||||| | Sbjct 299 TTCATCAGGTATCCAAAGAGCCAAAAATAAATCTCTAGTTTTTTCTTCTTTATTGCCAGT 240 Query 48278 ATTCCTTTTA---AGTTCAAGA-AAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 || ||||| | ||| | |||| | ||||||||||||||| || || | || | Sbjct 239 AT---TTTTACGTAATTCGGTATAAGTATA-TATATCAGCATGCCAAGGCTCAATGTAAA 184 Query 48334 TTGCCATTACACCTGGTCGTTTATTA 48359 || || | ||||||| | ||||| Sbjct 183 CAGCAATCGCCCCTGGTC-TCTATTA 159 >seq5389 Length=4388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 48124 TCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGGACACATCAAT 48182 |||||||||| ||||| || ||| | | | ||||| ||| |||||||||||| | || | Sbjct 837 TCTCAAATTCCTCCCCCTA-ACAATCTGCCAACCCCGGAGCTTCATTAGGACAAAACATT 895 Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 ||||| | |||| |||| | ||||| | || || | |||||| | ||| ||||| ||| Sbjct 896 GACCACTGCTCAGCATTCTGGACTCTCTTGATGAAAAGATCTGGAACCCAGAGAGC-ATA 954 Query 48243 AAT-AAATCCCTAG 48255 ||| || || |||| Sbjct 955 AATCAAGTCTCTAG 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560231159869920