Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 147 2e-30
seq205226 125 8e-24
seq100826 123 3e-23
seq191921 114 1e-20
seq231195 109 6e-19
seq161916 109 6e-19
seq151582 100 3e-16
seq164072 91.5 2e-13
seq5389 84.2 2e-11
>seq146431
Length=15796
Score = 147 bits (162), Expect = 2e-30
Identities = 398/599 (66%), Gaps = 15/599 (3%)
Strand=Plus/Plus
Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014
|||||||| || |||||||| |||| || ||||||| |||||||| ||||| ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGA 19073
||||| |||||||| ||||| | ||| || | |||||| || ||| || | | | || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240
Query 19074 AAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATC 19130
||||| |||||||| || || ||||| || | || ||| || || | || |||
Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAG-ATC 4299
Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190
|| ||||| ||| ||||| | ||| ||||| ||||| || ||||| ||
Sbjct 4300 C-----ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTC 4354
Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250
| | ||||||| | ||| | ||||||| | || | ||| | || |
Sbjct 4355 GACTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAG 4414
Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310
||| ||||| || ||||| ||||| || || || || ||||||||||| || | ||
Sbjct 4415 ACTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGC 4474
Query 19311 TTCTGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCAT 19369
||| | | ||||| || ||| |||| | | |||||| || ||||| |
Sbjct 4475 TTCGGAGACTTGTACATC-TGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGT 4533
Query 19370 CACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG 19429
|| || || || || || | || ||||| || || || ||| || | ||| |
Sbjct 4534 CAGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGA 4592
Query 19430 TATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488
| || ||| ||| |||| |||| |||||||||||| | ||||| || || ||
Sbjct 4593 TTTTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCT 4652
Query 19489 TCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547
|| ||||| || ||||| | ||| || | | || || || ||||| ||| |||||
Sbjct 4653 TCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711
>seq205226
Length=4968
Score = 125 bits (138), Expect = 8e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||||| ||| | || | | ||| || |||||||||
Sbjct 4507 CCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 4566
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||| || || | |||||||||||| | || | ||||| ||| |||
Sbjct 4567 TTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGAA 4626
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| |||||||| || |||| ||| ||||||| ||| | ||||||||||||
Sbjct 4627 ACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAATT 4686
Query 48540 CCTTCTATACTATCATCTATCATA 48563
|| || || |||||||| |||||
Sbjct 4687 CCCTCGATGCTATCATCCTTCATA 4710
>seq100826
Length=54576
Score = 123 bits (136), Expect = 3e-23
Identities = 152/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
||||||||||| || | || |||||||| ||| |||||||| ||| || | || | |
Sbjct 29867 GTTCCTGAATTGAACAGAGTCGGAGATGCGTGAGTAAACCATCTCTGAGACATTAAATGA 29926
Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718
|| ||||| | || ||||| ||||| | ||| |||||||| | ||| || | ||| ||
Sbjct 29927 TAAGTTTCTACCACGGAATCAATATCTTCCTTG-TGTATACCAACAGAAACCCTCATCAA 29985
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||| | |||||| |||||||||| ||| ||||| ||||| || ||| |||| |
Sbjct 29986 CATGTGTTGAGGCCTTTCAACAACTTTTCCTCGGATTTTTAAAAGGTACGATCTTTCAAG 30045
Query 48779 TGTTTTAAAACCAAAATAGTTGTAT 48803
|||||| || ||||| || | ||||
Sbjct 30046 TGTTTTGAATCCAAAGTAATCGTAT 30070
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||||| || | || | | ||| || |||||||||
Sbjct 29540 CCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACCA 29599
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||| || || ||||||||||||| | || | |||||| ||| |||
Sbjct 29600 TTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGAA 29659
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| |||||||| || |||| ||| ||||||| ||| | || ||||| ||
Sbjct 29660 ACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATATC 29719
Query 48540 CCTTCTATACTATCATCTATCATA 48563
|| || || |||||||| |||||
Sbjct 29720 CCCTCGATGCTATCATCCTTCATA 29743
>seq191921
Length=6033
Score = 114 bits (126), Expect = 1e-20
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|| ||||| || | ||| | ||||||| ||| | || | |||||||| |||||||||
Sbjct 4104 CCCCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAACATTGGAACAATACCA 4163
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| || | |||||||| || ||| ||||||||| | || | |||||| || ||||
Sbjct 4164 TTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 4223
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || ||||| || ||| ||| | ||||||| ||| || || ||||| ||
Sbjct 4224 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 4283
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
|| || || || |||||| |||| | ||||| |||||
Sbjct 4284 CCCTCAATGCTGTCATCTTTCATGCAGATCAGAAAGCAACT 4324
Score = 82.4 bits (90), Expect = 9e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||||| || || | || |||||||||||| | |||||| ||| || | || |
Sbjct 4445 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 4504
Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717
||| |||| || |||| || ||||| | ||| || || || | || || | |||||
Sbjct 4505 ATAAGTTTTGATTGCAGAGTCAATATCATCCTTG-TGGATGCCAACAGCAACCCTCATTA 4563
Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
||| | |||||| || ||||||| ||| | | ||| || || |||||| | || |
Sbjct 4564 GCATGTGTTGAGGCCTCTCAACAACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCAA 4623
Query 48778 ATGTTTTAAAACCAAAATA 48796
||||| || ||||| ||
Sbjct 4624 GCGTTTTGAATCCAAAGTA 4642
>seq231195
Length=5996
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | ||||||| || | || | | |||||| |||||||||
Sbjct 3051 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 3110
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
||||| | ||||| || || ||| ||||||||| | || | |||||| || ||||
Sbjct 3111 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 3170
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || ||||| || ||| ||| | ||||||| ||| || || ||||| ||
Sbjct 3171 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 3230
Query 48540 CCTTCTATACTATCATCTATCAT 48562
|| || || || |||||| ||||
Sbjct 3231 CCCTCGATGCTGTCATCTTTCAT 3253
>seq161916
Length=396
Score = 109 bits (120), Expect = 6e-19
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
||||| ||| || || || || | ||| | | ||||| || ||| || ||| | |||
Sbjct 376 TCCTTGACTAATTGGTGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAATTC 317
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659
|||||| ||||| || |||| |||||| | || |||||||||| || || || || |
Sbjct 316 ACAACTAGCTTCTAACGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCG 257
Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719
|| ||| | ||| |||| ||| | ||| |||||| || |||||||
Sbjct 256 TGATTCAGGTGAGCCAAATGGAAATCTCATCATTGAGAATAAATCTGCTAACCCTTGAAT 197
Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAA 47753
|||||||||||| || | ||| |||||||||||
Sbjct 196 ACCAATACCAATAGGACGATGTCTTTTATTAGAA 163
>seq151582
Length=319
Score = 100 bits (110), Expect = 3e-16
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 47358 TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGAT 47417
|||| ||| |||| |||||||||||||||||||||||||||| |||||| || |||||
Sbjct 105 TATAAATTTGTTGTGTATGGTTCTATAGATTCATTATTTCCAAGAATTTGTGCTGTTGAA 46
Query 47418 GCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCAT 47460
|| |||||||| | ||| | ||| || |||||| |||| ||
Sbjct 45 GCCGTAGGCATCGGTGCTAATAACAATGAATTTCTAACTCAAT 3
>seq164072
Length=359
Score = 91.5 bits (100), Expect = 2e-13
Identities = 147/206 (71%), Gaps = 9/206 (4%)
Strand=Plus/Minus
Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217
|||||||| | ||||||||| || |||| | |||| | || | |||||||
Sbjct 359 AGGACATTTACGAGGACACATTAAGCTCCAAGGTTGATCAGCCTCAACACGTCTCATAAA 300
Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277
| ||| |||||||||||||| | ||||||||| |||||| || ||||| ||||||| |
Sbjct 299 TTCATCAGGTATCCAAAGAGCCAAAAATAAATCTCTAGTTTTTTCTTCTTTATTGCCAGT 240
Query 48278 ATTCCTTTTA---AGTTCAAGA-AAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333
|| ||||| | ||| | |||| | ||||||||||||||| || || | || |
Sbjct 239 AT---TTTTACGTAATTCGGTATAAGTATA-TATATCAGCATGCCAAGGCTCAATGTAAA 184
Query 48334 TTGCCATTACACCTGGTCGTTTATTA 48359
|| || | ||||||| | |||||
Sbjct 183 CAGCAATCGCCCCTGGTC-TCTATTA 159
>seq5389
Length=4388
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/134 (76%), Gaps = 4/134 (3%)
Strand=Plus/Plus
Query 48124 TCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGGACACATCAAT 48182
|||||||||| ||||| || ||| | | | ||||| ||| |||||||||||| | || |
Sbjct 837 TCTCAAATTCCTCCCCCTA-ACAATCTGCCAACCCCGGAGCTTCATTAGGACAAAACATT 895
Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242
||||| | |||| |||| | ||||| | || || | |||||| | ||| ||||| |||
Sbjct 896 GACCACTGCTCAGCATTCTGGACTCTCTTGATGAAAAGATCTGGAACCCAGAGAGC-ATA 954
Query 48243 AAT-AAATCCCTAG 48255
||| || || ||||
Sbjct 955 AATCAAGTCTCTAG 968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560231159869920
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