Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_016563.1 Length=156897 Score E Sequences producing significant alignments: (Bits) Value seq158858 120 3e-22 seq149378 96.9 3e-15 >seq158858 Length=235449 Score = 120 bits (132), Expect = 3e-22 Identities = 458/706 (65%), Gaps = 25/706 (4%) Strand=Plus/Minus Query 154111 GATTTCTTAGTGCCATCATCAGTCTTAGGGTCTTTTTGAATTAATTTCTCTTCACCATTA 154170 ||||||||||| |||||||| || || || || || | ||| ||||| ||||| Sbjct 214913 GATTTCTTAGTTCCATCATCTGTTTTTGGATCCTTGAACAATAAACGTTCTTCTCCATTT 214854 Query 154171 ATTTGAGCCCATGTCGCCTTCATTGCGAATCCTAATGAGTCACGAGTATTGTACGCATAA 154230 | | ||| |||| || ||||| || || |||| || || ||||| | || || Sbjct 214853 ACTACAGCATATGTAGCTTTCATAGCAAACCCTAGAGAATCGCGAGTCTGATATTGGAAA 214794 Query 154231 GTGTAAGAACCTACACCTAATACCACGTTT--TCAATTGAGAATCCAGCAGCTACTAAA- 154287 || ||||| || || || || || |||||| | || | || || || |||| Sbjct 214793 GTATAAGATCCCACGCCGAAAACAACGTTTGTTGAA--GCAAAGCCTTTTTCTTCTAACT 214736 Query 154288 ---CGAGAATAAATCTCTTGCATACGCTCATAAGTTATTGAGTCTCCATAGATAGCTCCA 154344 | | |||| || ||||| |||||| ||| || ||||| |||||||| || ||| Sbjct 214735 TCTCAACAATAG--CTTTTGCA--CGCTCAAGAGTAATAGAGTCACCATAGATTGCACCA 214680 Query 154345 ATACAAGGTGGTAGAACTTTGTATCCTTTACTATTAACTGTGAATCCAAAGATTTTAGCT 154404 ||| || || | ||| || || || | ||| ||| |||||||| | | Sbjct 214679 ATATGAGTATCTAATAGTTTATAACCCTTCTCAGTAATTGTTCCACCAAAGATATCCCAT 214620 Query 154405 AATGAGGCTACTAGTCCCATACGAGCCCATTCGTTATCTGCATTAGGGTCACCACATAAG 154464 || | | | |||||| |||| | ||| | | ||| | |||| |||| |||| Sbjct 214619 AAAGCCTCAATTAGTCCTTTACGTTCAAGTTCTGTTTTTGCTTCTGGGTTACCAG-TAAG 214561 Query 154465 A-TATCTTCCGGTACACCTGAGTCTGGTCGAATTACTAGTTTACCATCACGA-CCTTCAA 154522 | || | || | || || || ||||| || | ||||||||| || | | Sbjct 214560 AATAAGAACAGGGTCTCCACTATCAGGACGAATAACCATACGACCATCACGTTCCATGAT 214501 Query 154523 TTACATCTTTAAGGTTAGGTAGAACACGTGATACGTTATCCCAAAAGTCAAATGAGTCTG 154582 || | |||| ||| ||| |||| | ||| |||| || ||| | | ||||| Sbjct 214500 TTCCTTCTT-AAGACGAGGAAGAATTTCTCCTACTACTGCCCAGAAATCATACGTGTCTG 214442 Query 154583 ATACGACACTAACGATACCTGTAGGATATACCTCAGTTAATAACCGACGAA---ATGTTT 154639 | || ||||| | || ||| |||||||||||||||||| ||| |||| | ||| Sbjct 214441 AAACTACACTGAAGAAGCCTTTAGGATATACCTCAGTTA-TAA--GACGCTTGTACATTT 214385 Query 154640 CTTCCTCGTCTAAGTTAACATCAGCTGA---TGCACACATCACGCTATGTTCAGTCGCGC 154696 | || || | || | || ||| ||| |||| || ||||||||| || Sbjct 214384 CGAATTCATCACGGCTATCTGCATCTGTGTTTGCTGACATAACTGAATGTTCAGTAGCTG 214325 Query 154697 TTACAGAACCTGCAACTAATTCGGTTTCTACGTTAGCATTGTAGTATTCTTCAAGGTAAA 154756 || || | | |||||||| |||| | ||| |||||||| || | ||||| ||| Sbjct 214324 GTATTGATGTTCCTACTAATTCCTTTTCAATGTTCGCATTGTAATAATGCTCAAGATAAG 214265 Query 154757 CGATAGCTGGAATGCTGTCAGTTCCTACGAATGACAATAAGTGACC 154802 | |||||||||| | || |||||||||||||| |||||||| || Sbjct 214264 CAATAGCTGGAACCGTATCTGTTCCTACGAATGATAATAAGTGTCC 214219 >seq149378 Length=35185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 208/306 (68%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 19915 TCATGATTAAGAACGTACCAATCGCTCGCGCACAATCTATCAGCT-CAGAGCGTTCATTC 19973 ||||||||||||||| | || | ||| || ||||| || | || || || |||||| Sbjct 32840 TCATGATTAAGAACGAAGTTATTGGTCGTGCTCAATC-ATTAACTGGTGACCGCTCATTC 32898 Query 19974 GGTACAACTGGTGTTTACGAGATTGGTTCTATCATGCCGAAAGAGCACGTTTACTTACGA 20033 ||||| ||||| || || ||||||| |||||||| | || ||||| | |||| Sbjct 32899 GGTACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAG 32958 Query 20034 TATGAAGGTACTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAAAACTTGGCTGCT-TT 20092 ||| ||||| ||| ||||||| |||| || | |||| | || || ||| | Sbjct 32959 TATACGGGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAG 33018 Query 20093 AGGATTCGCCGCTCTTGGTGAAGAAGTTCTACAAATGGATATCATGGACATCGTTCTATA 20152 | |||| | ||||| |||||||| ||| | | || |||||| | || || | | | Sbjct 33019 AAGATT-ACTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAA 33077 Query 20153 TGATAACATTACATCTGAGGTAGTAATCGCATATCGTGGTTGCTCAATTGATACTTACAG 20212 |||||| || || || | ||| |||||||| ||||||||| | || ||| Sbjct 33078 GGATAACCAAACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTC 33137 Query 20213 TGAAAC 20218 ||||| Sbjct 33138 AGAAAC 33143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500265736704160