Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_016570.1 Length=157304 Score E Sequences producing significant alignments: (Bits) Value seq249645 100 3e-16 >seq249645 Length=476466 Score = 100 bits (110), Expect = 3e-16 Identities = 272/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 52496 GTTAATCTGAATCCCATAGTCGATACGGCGTTCACGGTTCTCTTCCAATCCACGGTTGTT 52555 ||| | ||| | || ||||| ||| | || ||||||| ||||| | || ||||| || Sbjct 264957 GTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATT 264898 Query 52556 TTTGAGAACAACGACATCA-TCAAATTGATAATGCCAGA-TGGGAACATAGCATGTTGCC 52613 |||||| || | | || | |||| || ||||||| | |||| | | | | || || Sbjct 264897 TTTGAGTACCAGTA-ATGACTCAACTTCTAAATGCCATAGTGGGTAGA-ACAACGTCGCA 264840 Query 52614 GATCCACCACGGATACCGCCTTGAGAGCAAGACTTCAGGGCACCAGTCAAATACTTGATG 52673 | || ||||| | || ||||| ||||| | || | ||| | | || | || || Sbjct 264839 GCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGC-CGTTTGGAACAATTTATA 264781 Query 52674 AAT-GGAAC-CAGACCTGTATGGACCATTTCCCCTTTACGGATAGGGCTACCGATGCCAC 52731 || |||| ||| || ||||| ||| || ||||||||||||||| | | ||| Sbjct 264780 AAAAGGAATACAG-CCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCAC 264722 Query 52732 GAATTGCCCCAACATCGAATCCGATGCCAGCACGTTTGGAAACATAATCCACGATGCTTT 52791 | || || | | || ||||| |||||||| | || ||||| |||||| Sbjct 264721 GGATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGC 264662 Query 52792 TCGCAGTGGCATTAATTGAGTCCAATGTATCACCAGTTTTGATCAATACACAAGAGCTGA 52851 | | ||||| || || ||||| || |||||||| || ||| || || || ||||| | Sbjct 264661 TAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAA 264602 Query 52852 ACTGTCGGGTCGGGGTGCGGACGCCGGACATAATAGGTGTTGGAAG 52897 |||| || | || || || || || ||||| || || ||||| || Sbjct 264601 ACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAG 264556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501563786232320