Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq249645 408 8e-109 seq48658 84.2 4e-11 >seq249645 Length=476466 Score = 408 bits (452), Expect = 8e-109 Identities = 740/1064 (70%), Gaps = 39/1064 (4%) Strand=Plus/Minus Query 207858 TCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGA 207917 || || || |||||||| |||| ||| || || || || || || || || || Sbjct 269281 TCAGAATCAATCTGACCAACCAAGTACGAGCTAATCTCGGTCTCTTGCGGGGCGACTTGC 269222 Query 207918 ACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTT---G 207974 || ||||||| || ||| | ||| ||||||||||||||||| || || | || | Sbjct 269221 ACATTGTCAGACGACAACCACGTGTTGATCCATGGAATTGGGTTTGATTTTGAGTTCGGG 269162 Query 207975 AATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGG 208034 |||| ||| |||| ||| | |||||| | ||| || ||||| || | ||| ||| Sbjct 269161 AATGCCGCTGGCAAGCCGACCGCTTCCATACGTAAGTTAGTGATGTATTCGATATATTGG 269102 Query 208035 CAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCAC 208094 || || || |||||||| ||||| ||||| || |||||||||||||||||| | ||||| Sbjct 269101 CACAGAATGTCTTTGTTTAGACCAATCATCGAGCCATCTTTGAACAGATAGCCTGCCCAT 269042 Query 208095 TCTTTTTCTTGCTGAGCGG--TAGCAACGAACATGTCGTATGACTCTTGACGA--CACTC 208150 ||||||||||||| ||| | | || ||| || || || ||| | ||| ||||| Sbjct 269041 TCTTTTTCTTGCTCAGCAGCTTTGCG--GAAGATTTCA-AT-ACTTTCATCGAAACACTC 268986 Query 208151 TGCTGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTG 208210 ||| |||||||| ||||||| ||||| || ||| | ||| ||||| | || || Sbjct 268985 TGCGGCAATCTCGACCATCTCAGGATCGTCACGACCGTTGCGCATGAGGTTTAGCATATG 268926 Query 208211 CTGAGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTT 208270 ||| ||||| || || || ||||| ||||| ||||| | || ||||| || || || Sbjct 268925 CTGCGTACCTGTCAAATGCAGCGCTTCATCACGAGCGATGAGCTTAATGATTTTGGCATT 268866 Query 208271 ACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACG 208330 ||||||||||| || || || ||||| || || |||||||| || || || |||||||| Sbjct 268865 ACCTTCCATCAATTTGCGCTCAGCAAACGCAAACGAGCAAGCAAACGAGACATAGAAACG 268806 Query 208331 AATAGCTTCAAGTGAGTTGATAG--AT--TGCAGAGCCAGGTACA-GTGCTTTCTTAATA 208385 ||| ||||| || ||||| | || |||| ||| |||| |||||| || | Sbjct 268805 AATGGCTTCTAGGACGTTGACCGCCATGATGCA----CAGATACATCTGCTTT-TTCAGT 268751 Query 208386 GCACGAAGATTAACATTAACCTTCTCGCCATTGA----CTACGTGGTCACCCAGACCCAG 208441 || || | || || | | | | |||||||| | |||| |||| || Sbjct 268750 GCGCGTAAATCGACCGTGATTTCTTTGCCATTGATATTATGCGTG-----CCAGCACC-- 268698 Query 208442 GTAATAG-TA-CTGGTTGATCAAG--GCAAT-CAGTTTGTCGTAGTAATGGGAAACAGAT 208496 ||| || || | | || | || || || ||| | || ||||| |||| | | Sbjct 268697 GTATAAGCTATATAGCTG--CGAGTTGCGATACAGCTCATCATAGTACTGGGCGATATCA 268640 Query 208497 GCAGCACGTTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCG 208556 | ||||| ||| || ||||| | | || |||||||||| ||| ||||| Sbjct 268639 GAGGCACGGCCTAAGATGTGCTCGTTTTGCATAATATCATCAAAGATAATATTTGGATCA 268580 Query 208557 TTAACGATGTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCC 208616 || ||||| || | ||||| || |||||||| || ||| ||||| |||||||| | Sbjct 268579 TTGACGATATTACGAATGATATGCGTATAGCTGCGTGAGTGAATGGTCTCAGAGAACGAC 268520 Query 208617 CAGGTCTCAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTT 208676 || |||||| ||| || || ||||| |||||||| | ||| | || | | |||||| Sbjct 268519 CATGTCTCAATCCACGTCTCAAGCTCAGGGATAGACACTAGCGGCAATAGTACCACGTTT 268460 Query 208677 GGACCACGGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGG 208736 |||| ||| || ||||||||||| ||||| |||||||| || ||||| || | || | | Sbjct 268459 GGACTACGACCTTGGATAGAGTCGAGTAGGGTCTGATACTTAAGGTTGCTCAAAAATATG 268400 Query 208737 TGTTTCTCGTGATCTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCT 208796 || | |||||| || || | | || |||||||| || || ||||| |||||| Sbjct 268399 TGCTGCTCGTGGGATGATAGGTTGCTAAAATCCATACGGTCGCGTGACACATCAACTTCT 268340 Query 208797 TCAGGACGCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTC 208856 || |||||||| ||||| || | || || ||||| | || ||||||||| | || Sbjct 268339 TCTGGACGCCAAAAGAACGACAACTGCTTTTCAATCAATTGCTCAAAGATTGGGTGTTTT 268280 Query 208857 TGTTGGTCGTAACGAGAAACGTTGACGTTTTGACCCAGGAACAT 208900 |||||||| || || | ||||||||| ||||| | |||||| Sbjct 268279 TGTTGGTCATAGCGCGCTACGTTGACGGGCTGACCAAAGAACAT 268236 >seq48658 Length=532 Score = 84.2 bits (92), Expect = 4e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 16130 CTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC-ACTGAGCT 16188 |||||||||| |||||||||||| | ||||||||||| |||||||||| |||||||| Sbjct 297 CTACAGGATTTGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCT 356 Query 16189 AAGAGCGCCGAATTACTTATT 16209 |||| ||| || || ||||| Sbjct 357 AAGAACGCATAAATAATTATT 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 908051025820960