Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq28607 497 3e-136 seq218717 129 2e-25 >seq28607 Length=83266 Score = 497 bits (550), Expect = 3e-136 Identities = 700/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| || ||||| || | |||||||| || || | Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||||| | || ||||| || || || Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || ||||| || | | || | ||| || || || | ||||||||||||||| Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | || || ||||||||||| ||||| || ||| |||| ||| | Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | ||||| ||| | || ||||| ||| || | |||||||||| || | | Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| | || ||||| |||||||||| |||| || | | || || || Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || | || ||||| |||||| |||||| |||||||| || ||| Sbjct 1082 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1023 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||||||| | |||||||| || || || || || || ||||||||| Sbjct 1022 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 963 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || || ||| ||||| ||||| || ||||| || | || || ||||||||| || Sbjct 962 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 903 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 ||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 902 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 843 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || || || || ||||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 842 TACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 783 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || || || ||||| ||||| || || |||||| | |||||||| | || Sbjct 782 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 723 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||||| || || || ||| | || || | ||||| |||| ||||| || ||| Sbjct 722 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAAC 663 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| |||||||| ||| | | ||| | || ||| Sbjct 662 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 603 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||||| Sbjct 602 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 543 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 || ||||| || || ||| |||| Sbjct 542 CACAACTTCCCTCTAGACCTAGC 520 >seq218717 Length=448 Score = 129 bits (142), Expect = 2e-25 Identities = 153/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 |||||||||| || | || || ||| | || ||||| ||||||||||| |||| | Sbjct 213 AGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTC 154 Query 26202 CACTATCC-GCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGT 26260 | | | | || ||| | | || ||||| ||||||| | || ||||| |||||| | Sbjct 153 CTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTT 94 Query 26261 GATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 26320 |||| |||||||| || |||||| ||||||| |||||||| | |||||||| || || Sbjct 93 AATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAG 34 Query 26321 CATAATATACTCATGCACCCATTCCA 26346 || || || || ||||||||||| || Sbjct 33 CACAACATTCTTATGCACCCATTTCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146260788346272