Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 562 9e-156
seq218717 127 6e-25
>seq28607
Length=83266
Score = 562 bits (622), Expect = 9e-156
Identities = 725/996 (73%), Gaps = 6/996 (1%)
Strand=Plus/Plus
Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244
|||| |||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 510 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 569
Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304
||||||||| |||||||| | | ||| |||||||| || | | || | ||
Sbjct 570 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 629
Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364
||| ||||| || ||||| || || || || || || |||||||| ||| || || |
Sbjct 630 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 689
Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424
|| |||| ||| || | || || ||||||| || | ||||||||||||| |||
Sbjct 690 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 749
Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484
|||||| || |||||||| |||||||| | || ||||| || |||||||| || |||||
Sbjct 750 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 809
Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544
||| || |||||||| ||||| |||||||| || || | || ||| | | ||
Sbjct 810 GTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGT 869
Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604
||||| | || | |||||| || | |||||||||||| || | | ||
Sbjct 870 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 929
Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664
|||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || ||
Sbjct 930 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 989
Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724
||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 990 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 1049
Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783
|||||| || || | ||||| | || || || | ||| || || ||||| || ||||
Sbjct 1050 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGT-TGCAGCTGCAACAGGAGCTG 1108
Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843
||||||| || |||||| || ||||| || | | | ||||||||||||| | || |
Sbjct 1109 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1168
Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903
||| ||| || | ||||| | ||||| | || | |||| || || || || |
Sbjct 1169 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 1228
Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961
|||| ||||||||||| | ||| || ||||||||||| || || || || || |||||
Sbjct 1229 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 1286
Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021
|| || | || | || ||| ||||| || || |||||||| || || ||||||||
Sbjct 1287 AGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1346
Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081
| || |||||||| || || || || || ||||| || ||||| | |||||| | ||
Sbjct 1347 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1406
Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141
||| | | ||||||||| || | | || ||||| || ||||||||||| || | ||
Sbjct 1407 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1466
Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|| || || | ||||| || | ||||| ||||||
Sbjct 1467 AAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1502
>seq218717
Length=448
Score = 127 bits (140), Expect = 6e-25
Identities = 154/206 (75%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 5632 GTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGT 5691
||| || || |||||||| || ||||| || ||||||||||| | |||||||| |||||
Sbjct 7 GTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGT 66
Query 5692 ACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAA 5751
|| |||||| || ||||||||||||| | |||||||| || || | || || | ||
Sbjct 67 ACAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAA 126
Query 5752 AAATAC-TGAGTAGGCTGCGGC-AACCGGTGCTGAATATGCTACGCAAATCCATGGTCGC 5809
|| || | || || || || ||| || ||||||||||| || |||||| || |||
Sbjct 127 GAAAACAACAATA-GCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGC 185
Query 5810 ATTCCTAATCTGTAACTAAGTTCCCA 5835
|| || | | |||||||||||||
Sbjct 186 ATACCCAGACATAAACTAAGTTCCCA 211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152165192063208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |