Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq28607 562 9e-156 seq218717 127 6e-25 >seq28607 Length=83266 Score = 562 bits (622), Expect = 9e-156 Identities = 725/996 (73%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 |||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct 510 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 569 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| |||||||| | | ||| |||||||| || | | || | || Sbjct 570 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 629 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| ||||| || ||||| || || || || || || |||||||| ||| || || | Sbjct 630 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 689 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 || |||| ||| || | || || ||||||| || | ||||||||||||| ||| Sbjct 690 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 749 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 |||||| || |||||||| |||||||| | || ||||| || |||||||| || ||||| Sbjct 750 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 809 Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544 ||| || |||||||| ||||| |||||||| || || | || ||| | | || Sbjct 810 GTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGT 869 Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 ||||| | || | |||||| || | |||||||||||| || | | || Sbjct 870 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 929 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || || Sbjct 930 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 989 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724 ||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| || Sbjct 990 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 1049 Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783 |||||| || || | ||||| | || || || | ||| || || ||||| || |||| Sbjct 1050 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGT-TGCAGCTGCAACAGGAGCTG 1108 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 ||||||| || |||||| || ||||| || | | | ||||||||||||| | || | Sbjct 1109 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 1168 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| ||| || | ||||| | ||||| | || | |||| || || || || | Sbjct 1169 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 1228 Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||| ||||||||||| | ||| || ||||||||||| || || || || || ||||| Sbjct 1229 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 1286 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || ||| ||||| || || |||||||| || || |||||||| Sbjct 1287 AGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCC 1346 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || ||||| || ||||| | |||||| | || Sbjct 1347 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1406 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 ||| | | ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1407 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1466 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || || | ||||| || | ||||| |||||| Sbjct 1467 AAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1502 >seq218717 Length=448 Score = 127 bits (140), Expect = 6e-25 Identities = 154/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 5632 GTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGT 5691 ||| || || |||||||| || ||||| || ||||||||||| | |||||||| ||||| Sbjct 7 GTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGT 66 Query 5692 ACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAA 5751 || |||||| || ||||||||||||| | |||||||| || || | || || | || Sbjct 67 ACAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAA 126 Query 5752 AAATAC-TGAGTAGGCTGCGGC-AACCGGTGCTGAATATGCTACGCAAATCCATGGTCGC 5809 || || | || || || || ||| || ||||||||||| || |||||| || ||| Sbjct 127 GAAAACAACAATA-GCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGC 185 Query 5810 ATTCCTAATCTGTAACTAAGTTCCCA 5835 || || | | ||||||||||||| Sbjct 186 ATACCCAGACATAAACTAAGTTCCCA 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152165192063208