Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq249645 167 2e-36 >seq249645 Length=476466 Score = 167 bits (184), Expect = 2e-36 Identities = 265/380 (70%), Gaps = 0/380 (0%) Strand=Plus/Minus Query 118114 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118173 ||| || || ||||||| || ||||| | ||| ||||| |||||||| || || Sbjct 268610 CATAATATCATCAAAGATAATATTTGGATCATTGACGATATTACGAATGATATGCGTATA 268551 Query 118174 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGT 118233 ||| ||||| || |||||| ||||| ||| ||||| | ||| || || || | Sbjct 268550 GCTGCGTGAGTGAATGGTCTCAGAGAACGACCATGTCTCAATCCACGTCTCAAGCTCAGG 268491 Query 118234 GTCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAG 118293 | ||||| | ||| | || || | || || | ||| || || | ||| || || || Sbjct 268490 GATAGACACTAGCGGCAATAGTACCACGTTTGGACTACGACCTTGGATAGAGTCGAGTAG 268431 Query 118294 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 118353 | |||| ||||| |||||||| | || ||||||| |||||| | || || | | Sbjct 268430 GGTCTGATACTTAAGGTTGCTCAAAAATATGTGCTGCTCGTGGGATGATAGGTTGCTAAA 268371 Query 118354 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 118413 || |||||||| || | ||| | ||||||||| |||||||| ||||||| || ||||| Sbjct 268370 ATCCATACGGTCGCGTGACACATCAACTTCTTCTGGACGCCAAAAGAACGACAACTGCTT 268311 Query 118414 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 118473 || |||| | ||| || | | |||||| || ||||||||||| | ||||| | Sbjct 268310 TTCAATCAATTGCTCAAAGATTGGGTGTTTTTGTTGGTCATAGCGCGCTACGTTGACGGG 268251 Query 118474 CTCGCCGAGGAACATCGGCT 118493 || || | ||||||||||| Sbjct 268250 CTGACCAAAGAACATCGGCT 268231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 119157 CACGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGATCTGGCTGGATGTCTCGCAAGGCA 119216 |||| |||||||| | ||| || || | || | |||||| || || || || | |||| Sbjct 265855 CACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGAGGTTTCAGACGGCA 265796 Query 119217 TCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATCGCGATATCGACACGCAGCTTTT 119276 ||| | || || || ||||| ||||| || || | ||| ||| |||| ||| ||| Sbjct 265795 TCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGATCTCGCCACGTAGCGTTT 265736 Query 119277 CCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGC--ATCCACCTCTTTTTTGTAACGGTC 119334 |||| || | | ||| | | || | ||| | ||||| ||||||||||| || Sbjct 265735 CCCAATCTAAATGTAGTGGCTCT-TG-GCAGATCTTATCCAAGTCTTTTTTGTACGTATC 265678 Query 119335 GATCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAAGAGATCACATTTGCCCAGTTC 119394 ||||||| || || || ||||| || ||||| | ||| | ||| ||| | || Sbjct 265677 AATCGGCAAGATACCTTGTGAGTAGGTGGTCTCATTGAACGCAGGACACGCGCCTTGCTC 265618 Query 119395 TTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCA 119443 |||||||| | ||||||| | || || |||| ||||||||| Sbjct 265617 TTTTGCCAATTTGTTTGACGCTTTTAAGAGATAGAACTGCAATGCTTCA 265569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475950430555040