Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq104206 113 1e-20 seq251147 93.3 1e-14 >seq104206 Length=286 Score = 113 bits (124), Expect = 1e-20 Identities = 194/281 (69%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 25954 TGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTT 26013 ||||| || || |||| || || |||||||| || |||||||| || | || | | Sbjct 3 TGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAAACCATTTTGA 62 Query 26014 TCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGG 26070 ||| || || | |||| || | || ||||| || || || |||||||| || Sbjct 63 TCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACCTTTTCGAAGA 122 Query 26071 TACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACT 26130 || ||||| || || || |||| || ||||| | || | | ||||||||| || | Sbjct 123 TATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCATTCAGTTTTT 182 Query 26131 TCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTG 26190 ||||| ||||| || || | ||||| ||||| ||||||| || |||| || || || Sbjct 183 TCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAATGTCATATTC 242 Query 26191 GCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATC 26231 | || || ||||||||||| ||||| | || ||||| Sbjct 243 ACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATC 283 >seq251147 Length=238287 Score = 93.3 bits (102), Expect = 1e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 26113 CGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAG 26172 ||||||||||||||| ||||| | ||||||||| | ||||| || |||| ||||| Sbjct 219405 CGATGCCATTCTGTCGCTTCTCTTTTTTCGCCGCTTTGCTTGTCTGTCCATTGCTCTGAC 219346 Query 26173 GTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCG 26232 ||||| || | ||| |||| || ||||||||| | | ||| ||| ||||| Sbjct 219345 GTCGCAACCGAAATATTGGTCACGCTACCGCCATTACTAAATTGACGTGCCTCAGGATCT 219286 Query 26233 TTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCG 26273 || |||||||||| | ||| |||||||| || ||||| Sbjct 219285 GCTCCAAGGTTACCGATGATGATAACTTTATTAACTCCGCG 219245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159310445615848