Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_017981.1
Length=49981
Score E
Sequences producing significant alignments: (Bits) Value
seq104206 113 1e-20
seq251147 93.3 1e-14
>seq104206
Length=286
Score = 113 bits (124), Expect = 1e-20
Identities = 194/281 (69%), Gaps = 3/281 (1%)
Strand=Plus/Plus
Query 25954 TGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTT 26013
||||| || || |||| || || |||||||| || |||||||| || | || | |
Sbjct 3 TGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAAACCATTTTGA 62
Query 26014 TCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGG 26070
||| || || | |||| || | || ||||| || || || |||||||| ||
Sbjct 63 TCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACCTTTTCGAAGA 122
Query 26071 TACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACT 26130
|| ||||| || || || |||| || ||||| | || | | ||||||||| || |
Sbjct 123 TATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCATTCAGTTTTT 182
Query 26131 TCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTG 26190
||||| ||||| || || | ||||| ||||| ||||||| || |||| || || ||
Sbjct 183 TCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAATGTCATATTC 242
Query 26191 GCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATC 26231
| || || ||||||||||| ||||| | || |||||
Sbjct 243 ACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATC 283
>seq251147
Length=238287
Score = 93.3 bits (102), Expect = 1e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 26113 CGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAG 26172
||||||||||||||| ||||| | ||||||||| | ||||| || |||| |||||
Sbjct 219405 CGATGCCATTCTGTCGCTTCTCTTTTTTCGCCGCTTTGCTTGTCTGTCCATTGCTCTGAC 219346
Query 26173 GTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCG 26232
||||| || | ||| |||| || ||||||||| | | ||| ||| |||||
Sbjct 219345 GTCGCAACCGAAATATTGGTCACGCTACCGCCATTACTAAATTGACGTGCCTCAGGATCT 219286
Query 26233 TTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCG 26273
|| |||||||||| | ||| |||||||| || |||||
Sbjct 219285 GCTCCAAGGTTACCGATGATGATAACTTTATTAACTCCGCG 219245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159310445615848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |