Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq26767 154 2e-32 >seq26767 Length=1149 Score = 154 bits (170), Expect = 2e-32 Identities = 558/858 (65%), Gaps = 20/858 (2%) Strand=Plus/Plus Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860 ||| || || || | ||| | ||||||| | ||||| | | |||||||||||||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920 | |||| || || | ||| | | ||||| ||| |||||||| || || | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAA- 141979 ||| || | || | || || ||||||||||| || | || || | ||| || Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGC---ACTTTGAAA 209 Query 141980 --GTTTCCAAAATGGTGTTACACCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCC 142037 |||| |||| || | |||||| || |||| || | ||| | || Sbjct 210 ATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACC 269 Query 142038 TTCGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTAC 142097 | | ||||| ||| ||| | |||||||| || || |||| ||||||||||||||| Sbjct 270 TACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTAC 329 Query 142098 AATAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACA 142157 ||||| ||| | | |||| |||||||| |||| | ||||||||||||||| Sbjct 330 AATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 389 Query 142158 TGAACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAAC 142217 ||| |||||||| ||||| || || | ||| || | | ||| || || |||||| || Sbjct 390 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAA- 448 Query 142218 TTGTTTTAA--TGATGTTGCATCATAAAAATCTTTTACGTATTGAATACGTTTATCTAAA 142275 | || || ||| | |||| ||||||| | ||||| | || | ||| | Sbjct 449 -TTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTAATATTTTTG 507 Query 142276 GGCTCATCTTG-ATGTAAACACATACCAATGAGTATAAACATAAATTGTGGTGTTTCATA 142334 || | || | | | ||| ||| | || || | | | | |||||| | ||||||| Sbjct 508 GGAT-ATTTAGAAAATAAGCACGCAGATATTAGAACATATAAAAATTGGGCGCTTTCATA 566 Query 142335 AATTTTACCAGAAGAT-CGATCTTTTACAAGATACTTATCTTTAACTTGCATCGCACCTG 142393 ||||| || | || || | || || | ||| || ||| | ||| | | ||| Sbjct 567 TATTTT-CCCGCTTATGCGGTTTTGTATCAAATATTTTCCTTCTAATTGTTTTACCGCTG 625 Query 142394 CATATGTAAAATTAAAATCACGGTCATGATCGATAATTGAATTTA-AACTATCATAGTCT 142452 |||||| ||| || | ||| || ||||| |||| | ||| | ||| ||| ||| Sbjct 626 CATATGAAAAGTTCATATCGCGCCAATGATTAATAAAAGCATTCATTTCTA-AATATTCT 684 Query 142453 GCTTTAGACCACTTTGTTAAAAGTTCTTTATCATATACACCCTGTTCTACACCA--GATT 142510 | | ||| | | | |||| | | |||||||||| | ||| | |||| || Sbjct 685 TCATAAGAGTAATATTTTAATAAATTTTTATCATATTTA-CCTAAAAGA-ACCATTTTTT 742 Query 142511 TAACATGATCATATAAATGGGGTGGATCAAATTGACCAAATACTTCTTTACGAAGACCAA 142570 | ||||| ||||| ||| || || |||||||||||| | ||| ||| | |||| | Sbjct 743 TTACATGTTCATACAAACAAGGAGGCTCAAATTGACCATAAGCTTTTTTTCTAAGATGGA 802 Query 142571 ACATTGCTAGATTTGATGCGACATATTGATAATCTGCGGATTCGACTTGAATGGAATCGG 142630 | || |||| ||| ||| | |||||||||||||| | || | ||| ||||| Sbjct 803 ATATAGCTAATCTTGCTGCCATATATTGATAATCTGGTGTATCTGGTGAAATTAGATCGG 862 Query 142631 CTGCAACTTTAACAATAG 142648 ||||| |||||| |||| Sbjct 863 CTGCAGCTTTAATTATAG 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531489090219360