Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_018087.3
Length=166687
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 154 2e-32
>seq26767
Length=1149
Score = 154 bits (170), Expect = 2e-32
Identities = 558/858 (65%), Gaps = 20/858 (2%)
Strand=Plus/Plus
Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860
||| || || || | ||| | ||||||| | ||||| | | ||||||||||||||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920
| |||| || || | ||| | | ||||| ||| |||||||| || || | |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAA- 141979
||| || | || | || || ||||||||||| || | || || | ||| ||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGC---ACTTTGAAA 209
Query 141980 --GTTTCCAAAATGGTGTTACACCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCC 142037
|||| |||| || | |||||| || |||| || | ||| | ||
Sbjct 210 ATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACC 269
Query 142038 TTCGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTAC 142097
| | ||||| ||| ||| | |||||||| || || |||| |||||||||||||||
Sbjct 270 TACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTAC 329
Query 142098 AATAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACA 142157
||||| ||| | | |||| |||||||| |||| | |||||||||||||||
Sbjct 330 AATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 389
Query 142158 TGAACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAAC 142217
||| |||||||| ||||| || || | ||| || | | ||| || || |||||| ||
Sbjct 390 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAA- 448
Query 142218 TTGTTTTAA--TGATGTTGCATCATAAAAATCTTTTACGTATTGAATACGTTTATCTAAA 142275
| || || ||| | |||| ||||||| | ||||| | || | ||| |
Sbjct 449 -TTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTAATATTTTTG 507
Query 142276 GGCTCATCTTG-ATGTAAACACATACCAATGAGTATAAACATAAATTGTGGTGTTTCATA 142334
|| | || | | | ||| ||| | || || | | | | |||||| | |||||||
Sbjct 508 GGAT-ATTTAGAAAATAAGCACGCAGATATTAGAACATATAAAAATTGGGCGCTTTCATA 566
Query 142335 AATTTTACCAGAAGAT-CGATCTTTTACAAGATACTTATCTTTAACTTGCATCGCACCTG 142393
||||| || | || || | || || | ||| || ||| | ||| | | |||
Sbjct 567 TATTTT-CCCGCTTATGCGGTTTTGTATCAAATATTTTCCTTCTAATTGTTTTACCGCTG 625
Query 142394 CATATGTAAAATTAAAATCACGGTCATGATCGATAATTGAATTTA-AACTATCATAGTCT 142452
|||||| ||| || | ||| || ||||| |||| | ||| | ||| ||| |||
Sbjct 626 CATATGAAAAGTTCATATCGCGCCAATGATTAATAAAAGCATTCATTTCTA-AATATTCT 684
Query 142453 GCTTTAGACCACTTTGTTAAAAGTTCTTTATCATATACACCCTGTTCTACACCA--GATT 142510
| | ||| | | | |||| | | |||||||||| | ||| | |||| ||
Sbjct 685 TCATAAGAGTAATATTTTAATAAATTTTTATCATATTTA-CCTAAAAGA-ACCATTTTTT 742
Query 142511 TAACATGATCATATAAATGGGGTGGATCAAATTGACCAAATACTTCTTTACGAAGACCAA 142570
| ||||| ||||| ||| || || |||||||||||| | ||| ||| | |||| |
Sbjct 743 TTACATGTTCATACAAACAAGGAGGCTCAAATTGACCATAAGCTTTTTTTCTAAGATGGA 802
Query 142571 ACATTGCTAGATTTGATGCGACATATTGATAATCTGCGGATTCGACTTGAATGGAATCGG 142630
| || |||| ||| ||| | |||||||||||||| | || | ||| |||||
Sbjct 803 ATATAGCTAATCTTGCTGCCATATATTGATAATCTGGTGTATCTGGTGAAATTAGATCGG 862
Query 142631 CTGCAACTTTAACAATAG 142648
||||| |||||| ||||
Sbjct 863 CTGCAGCTTTAATTATAG 880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531489090219360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |