Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq249645 324 9e-84 seq26767 87.8 1e-12 >seq249645 Length=476466 Score = 324 bits (358), Expect = 9e-84 Identities = 1080/1656 (65%), Gaps = 46/1656 (3%) Strand=Plus/Plus Query 68427 GCTTCTACGATGTGACCAGTACATTCAAGTTGTCTCTGCCAACGCCAATTATGGCCGGCG 68486 ||||||| |||| |||| |||||| | || || ||||||||||| ||| | || | Sbjct 264521 GCTTCTATGATGCGACCTCAGAATTCAAAATCTCACTACCAACGCCAATCATGTCAGGTG 264580 Query 68487 TGCGCACCCCTACTCGCCAGTTCTCCAGCTGCGTGCTGATTGAAGCTGCTGATAGTCTGA 68546 |||| || || | || ||||| | ||||| | || ||| || |||||| | Sbjct 264581 TGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTCTTAATCGAATGTGGTGATAGCTTAG 264640 Query 68547 AAGGGATTAGCGCTGCGTCTTCCGCAATCATCGACTACGTGTCACGTCGCGCGGGCATTG 68606 | || | ||| | || ||| ||| | ||| ||||||| || || || || | Sbjct 264641 ACTCTATCAACGCCACCACTAGCGCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCG 264700 Query 68607 GTATTGGCTTTGGGCGTCTGCGTGCGCTGGGCAGTGAGATCCGCAATGGCGAGGCCACCC 68666 | || | || ||| | ||||| || || || ||||| || || || | Sbjct 264701 GCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGC 264760 Query 68667 ACACTGGCGTTTTTCCATTCCTGAAACACTTCCAGACGGCGGTGAAATCCTGCTCTCAGG 68726 | |||||| | |||| || ||| ||||| ||||| || |||| |||||| || | Sbjct 264761 ATACTGGCTGTATTCCTTTTTATAAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAG 264820 Query 68727 GCGGTGTTCGCGGCGGCGCTGCTACAGCGTTCTATCCGATCTGGCACTTGGAAGTTGAAA 68786 | || || || ||||| ||||| || |||||| || | ||||| || |||||||| Sbjct 264821 GTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTACCCACTATGGCATTTAGAAGTTGA-- 264878 Query 68787 GTC--TGCTGGTGCTGAAAAACAACCGTGGCATTGAAGAGAACCGCGTTCGTCATCTCGA 68844 ||| | ||||| || ||||| ||||| || ||||||| ||||| || |||||| | || Sbjct 264879 GTCATTACTGGTACTCAAAAATAACCGCGGTGTTGAAGACAACCGTGTCCGTCATATGGA 264938 Query 68845 CTATGGCGTGATGATCAACCGTCTGATGTATCGCCGCCTGGTGCGCAACG---AAAACAT 68901 ||| ||||| | | ||| |||||| ||||| | ||| | || |||| Sbjct 264939 CTACGGCGTACAGTTAAACAAAACGATGTACACGCGCCTCAT---CAAAGGTCAAGACAT 264995 Query 68902 TACGCTGTTCAGCCCACACGATGTGCCGGGCCTGTACGACGCGTTCTTTGTTGATCAGGA 68961 |||| ||| ||| |||| || ||||| ||||| |||||||||| ||||| || Sbjct 264996 CTCGCTATTCTCACCAGGCGATACCCCAGGCCTTTACGATGCGTTCTTTGAAGATCAAGA 265055 Query 68962 CAAGTTCGAAGAGCTGTACCTGAAGTACGAAGCCGACGAGAGCATCCGTAAGAAATCTA- 69020 ||| ||||||||| | ||| ||||||||| ||| | | | |||| | || | Sbjct 265056 CAAATTCGAAGAGTTATACACCAAGTACGAAAACGATCCTAACGTGCGTA-GCCGTCAAA 265114 Query 69021 TCCCGGCCGTCGACCTGTTC--TCTACGCTGATGCAGGAGCGTGCCTCCACTGGTCGTGT 69078 |||| || | ||| |||| |||| ||||||| ||||| ||| ||| |||||| | Sbjct 265115 TCCCAGCGGCAGACTTGTTTAGTCTAA--TGATGCAAGAGCGCGCCAGCACAGGTCGTAT 265172 Query 69079 TTATATTGCCAACGTCGACCACATGAACGATCACGGCGCATTCGTTCCGGAAATTGCACC 69138 || || |||||||| || ||| ||| || |||| | || |||| || Sbjct 265173 CTACATCCAAAACGTCGATCATTGCAACACGCACAGCCCATTTGACGCGACGGTTGCGCC 265232 Query 69139 GGTACACCAGTCCAATCTCTGTATGGAGATCACGCTACCGACCAAGCCACTGG---CGTT 69195 | | | |||||| || || |||||||| ||| | ||||||||||||||||| | | Sbjct 265233 GATTCGCCAGTCAAACCTATGTATGGAAATCGCCCTACCGACCAAGCCACTTGATAACAT 265292 Query 69196 CACTGACGATCCGAACGGGGAAATCGCGCTTTGCACCCTGTCTGCGTTCAACCTGGGCGC 69255 || |||||| | || |||||||| || || || || || ||| ||||| |||| Sbjct 265293 CAATGACGAAGC---AGGCGAAATCGCCCTATGTACGCTATCAGCGGTCAACTTGGGTAA 265349 Query 69256 GATC-CGCACGCTGGACTCACTGAAAGACGTGGCGTTTTACGCTGTGGCGGCACTGGACT 69314 || ||| | || ||| | | || || | ||| || || || Sbjct 265350 AGTCGAAAACGTCAGCGACATCGAAGAGCCAGCCGAGCTAATC-GTGCGTGCGCTTGATG 265408 Query 69315 CTCTGCTCGACTATCAGGACTACCCTATGGCTGCTGCAGAAATCCCGGC-TAAAGC-TCG 69372 | || |||||||| || ||||| || | || || ||| |||| | || ||| Sbjct 265409 CCCTACTCGACTACCAAGACTATCCCGTCAAAGCGGCTCAAA--ACGGCAGCATGCGTCG 265466 Query 69373 TCGTAGTCTGGGTATTGGCGTGACCAACTTTGCTTACTATCTGGCGAAGAACGGCTTTAA 69432 ||||| || ||| | ||||||| |||| ||| || || | || || || ||| | Sbjct 265467 TCGTACGCTAGGTGTAGGCGTGATTAACTATGCGTATTACTTAGCCAAAAATGGCGTGCG 265526 Query 69433 CTACTCTGACG-CTGCGGGCAACCAGCTGGTGCATGAGACCTTCGAAGCCATTCAGTACT 69491 ||| ||||||| | ||| || ||| ||| |||| || ||||| | |||| || Sbjct 265527 CTATTCTGACGACAGCGCGC-TTGGTCTGACCCATCAGACGTTTGAAGCATTGCAGTTCT 265585 Query 69492 ACCTGCTCGATGCGAGCTGCCGACTGGCCGAAGCGAAAGGTGCATGTGACTG-GTTCTCC 69550 | || | | ||| | | |||| ||| | |||| || ||| ||| |||| Sbjct 265586 ATCTCTTAAAAGCGTCAAACAAATTGGCAAAAGAGCAAGGCGCGTGT-CCTGCGTTCAAT 265644 Query 69551 CACACCAAATACGCACAGGGCCAGCTGCCAGTCGACCACTATCGCAAAACGC-TGGAT-- 69607 | |||| ||| |||| || |||| | || || | |||| | ||||| Sbjct 265645 GAGACCACCTACTCACAAGGTATCTTGCCGATTGA-TACGTACAAAAAAGACTTGGATAA 265703 Query 69608 -ACCAACCCGGAGACATCTTTCGAGCTGAAAATGCCGTGGGAAGAGCTGCGTGGCCGTAT 69666 | | || ||| || | | | | || |||||| ||| |||||| || Sbjct 265704 GATCTGCCAAGAGCCA-----CTACATTTAGAT----TGGGAAACGCTACGTGGCGAGAT 265754 Query 69667 CCGTGAGCATGGTCTGCGTAACTCAACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAG 69726 | |||||| |||||||| ||||| || || ||||| ||||||| ||| || || || Sbjct 265755 CACTGAGCACGGTCTGCGCAACTCTACCCTAACCGCCTTGATGCCGTCTGAAACCTCAAG 265814 Query 69727 CCAGATCACCAACTCCACCAATGGTATTGAGCCGCCCCGCGGCCCGGTATCCGTGAAGTC 69786 |||||| |||| | ||||| ||||| ||||| || || || | ||| || | || | Sbjct 265815 TCAGATCGCCAATGCGACCAACGGTATCGAGCCACCACGTGGTCTGGTCTCTATCAAAGC 265874 Query 69787 TTCCAAAGACGGCATCGTGAAGATGGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTA 69846 || ||||| |||||| | ||| ||||| || || | | | || ||||| ||||| Sbjct 265875 ATCAAAAGATGGCATCTTAAAGCAAGTCGTGCCTGAGATTGACAAGCTAAAAGATCAGTA 265934 Query 69847 CGAGTACCTGTGGGATATGCCGGATAACCGCGGCTATCTGACTAAGGTGGCCATCATTCA 69906 |||| || ||| | |||||| | || ||| || || | ||| || ||||| || Sbjct 265935 CGAGCTACTATGGCAAATGCCGAACAATGACGGTTACCTAAAGCTGGTCGCTATCATGCA 265994 Query 69907 GAAGTTCTTCGATCAGGCCATCTCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGG 69966 || ||| ||||||| |||||||| || || |||||||| || ||| | | || Sbjct 265995 AAAATTCGTCGATCAAAGTATCTCTGCCAATACTAACTACGATCCCGTTCGTTATGCAGG 266054 Query 69967 CGACAAGGTTCCAATGATGAAGCTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGT 70026 | | || || |||| || |||| |||| |||| || ||| | ||||| Sbjct 266055 TGGCCGTGTACCGATGAAGATATTGCTAAAAGACTTGCTAAACGCTTATAAAATGGGTGT 266114 Query 70027 GAAGACGCTTTATTACCACAACACGCGTGATGGCGC 70062 ||||||| | || ||||| |||||||||||||| || Sbjct 266115 GAAGACGTTGTACTACCATAACACGCGTGATGGTGC 266150 Score = 176 bits (194), Expect = 3e-39 Identities = 258/361 (71%), Gaps = 7/361 (2%) Strand=Plus/Plus Query 70309 GAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTACCGT 70368 || || |||||| | || ||| | ||||||||||| ||||| || || ||||| ||| Sbjct 268230 GAGCCGATGTTCTTTGGTCAGCCCGTCAACGTAGCGCGCTATGACCAACAAAAACACCCA 268289 Query 70369 GACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTCGAC 70428 ||| || | |||||||||| || | |||||||| ||||| || |||||||| || Sbjct 268290 ATCTTTGAGCAATTGATTGAAAAGCAGTTGTCGTTCTTTTGGCGTCCAGAAGAAGTTGAT 268349 Query 70429 ATTACCACTGACCGCATCGACTTCAATACCAAGCTGCAAGAGCACGAGC-GC-CATATTT 70486 | | ||||| || || || || ||| || | ||||||| || ||||||| Sbjct 268350 GTGTCACGCGACCGTATGGATTT---TAGCAACCTATCATCCCACGAGCAGCACATATTT 268406 Query 70487 TCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTAACG 70546 | |||||||||| || ||||| || | || || | || ||||| ||||| |||| Sbjct 268407 T--TGAGCAACCTTAAGTATCAGACCCTACTCGACTCTATCCAAGGTCGTAGTCCAAACG 268464 Query 70547 CAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGTCGT 70606 ||| ||||||| | || || |||||||| ||||| ||| | ||||| ||||||| Sbjct 268465 TGGTACTATTGCCGCTAGTGTCTATCCCTGAGCTTGAGACGTGGATTGAGACATGGTCGT 268524 Query 70607 TCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATGACC 70666 |||| ||||| |||||| |||||||||||||| || || || ||| || |||| | Sbjct 268525 TCTCTGAGACCATTCACTCACGCAGCTATACGCATATCATTCGTAATATCGTCAATGATC 268584 Query 70667 C 70667 | Sbjct 268585 C 268585 >seq26767 Length=1149 Score = 87.8 bits (96), Expect = 1e-12 Identities = 261/403 (65%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 68447 ACATTCAAGTTGTCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAG 68506 || ||||| | ||| | || || ||||||||| | || || | || |||||||| || Sbjct 458 ACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAA 399 Query 68507 TTCTCCAGCTGCGTGCTGATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCT 68566 || | || || | |||||| || ||||| ||| | |||| |||| | || Sbjct 398 TTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACT 339 Query 68567 TCCGCAATCATCGACTACGTGTCACGTCGCGCGGGCATTGGTATTGGCTTTGGGCGTCTG 68626 | || | | || || || | || || || ||||||||| ||| | Sbjct 338 AGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATT 279 Query 68627 CGTGCGCTGGGCAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTC 68686 ||||| | || ||| || | |||||||| || || ||||| | |||| || Sbjct 278 CGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTT 219 Query 68687 CTGAAACACTTCCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCT 68746 ||||| || || | || || |||||||| ||||| || || ||| | || || || Sbjct 218 TATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCG 159 Query 68747 GCTACAGCGTTCTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAAC 68806 || || || ||||| || ||||| || ||| |||||||| | | || | ||||| Sbjct 158 GCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAAT 99 Query 68807 AACCGTGGCATTGAAGAGAACCGCGTTCGTCATCTCGACTATG 68849 || | ||||||||||| || | || ||||| | || |||| Sbjct 98 AATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTATG 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329355835432080