Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq26767 170 2e-37 seq249645 107 2e-18 >seq26767 Length=1149 Score = 170 bits (188), Expect = 2e-37 Identities = 303/441 (69%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 131909 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 131968 ||||||||| ||||| |||| ||| || |||| || || || ||||||||| | || Sbjct 479 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 420 Query 131969 GCTCGTACTCCAACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGTGATTCG 132025 | | | ||||| ||||| || || ||| | |||| | |||||| | |||| Sbjct 419 GTTAGAACTCCTACTCGACAATT---TAGCTCATGTGTTTTAATTGAATGTGATGATAAT 363 Query 132026 TTAAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGT 132085 || | ||||||||| ||| | || ||| | ||||| ||||| ||||||| || Sbjct 362 CTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 303 Query 132086 ATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTT 132145 || ||||| || | ||| | ||||||||| |||| | || | | || |||| Sbjct 302 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 243 Query 132146 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 132205 ||||| ||| |||||| || | |||||||| |||| ||| |||||||| |||||| Sbjct 242 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 183 Query 132206 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 132265 ||||| || || | ||||| || || || | |||||| || ||||| || ||| | Sbjct 182 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 123 Query 132266 GAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATG 132325 || | |||||||| | |||||||| | ||| | || ||||| | | || || | Sbjct 122 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTT 63 Query 132326 GACTACGGAATTCAAATTAAT 132346 || || | | | ||||||||| Sbjct 62 GATTATGCAGTACAAATTAAT 42 >seq249645 Length=476466 Score = 107 bits (118), Expect = 2e-18 Identities = 298/450 (66%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 131888 GACCGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCT--ACTCATCAAGTTTCAT 131945 ||||||||| | || | | || || |||||||| || | ||| || | ||| Sbjct 264499 GACCGTTTGCATTATGTCAAACGCTTCTATGATGCGACCTCAGAATTCA--AAATCTCAC 264556 Query 131946 TGCCTACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCT-CTAGTTGTGTA 132004 | || || ||||| ||| |||||| ||||| ||| | || ||||| || || | || Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGT-GCGTC 264615 Query 132005 GTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGA 132063 | || ||| |||||| ||| | ||||| ||| || | ||| || | | Sbjct 264616 TTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCA-TCGTACG 264674 Query 132064 ATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTC 132123 ||| | || | || |||||||| || ||||||| ||| | ||||| ||| Sbjct 264675 CTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAG 264734 Query 132124 TAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCA 132183 ||| || ||||||| | ||||| || |||||| || | ||| ||||| Sbjct 264735 CCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCCA 264794 Query 132184 AACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTA 132243 ||| || || |||| || || |||||||| | ||||| |||||||| || || || Sbjct 264795 AACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTA 264854 Query 132244 TCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGA 132303 || | ||||| |||||||| ||| || | || || ||||||||| || || || Sbjct 264855 CCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTGA 264914 Query 132304 TGAAAACCGTATTCGACATATGGACTACGG 132333 || |||||| | || |||||||||||||| Sbjct 264915 AGACAACCGTGTCCGTCATATGGACTACGG 264944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539369877403840