Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_018856.1
Length=153962
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 111 2e-19
seq149378 109 5e-19
>seq158858
Length=235449
Score = 111 bits (122), Expect = 2e-19
Identities = 118/150 (79%), Gaps = 8/150 (5%)
Strand=Plus/Plus
Query 77822 GATTGGGCGCTTTAAACTCCGTGAATTCAGAGGAAGCCTAAGTCGTAAGA----TATGGT 77877
||||| | | ||||| | |||||||||| ||||||||| || || || ||||||
Sbjct 135467 GATTGCGTTCGTTAAATTGGGTGAATTCAGGGGAAGCCTACGTGCTATGAAGCATATGGT 135526
Query 77878 AATTCTGAGCCAAGCTTAACAGGGATGTTAAGAAGGTGCAACGACTAAT-GTATACGGAC 77936
||| ||||||| |||| | |||||| | ||||||||||||||||||| |||||| ||
Sbjct 135527 AATCCTGAGCCGAGCTGCATAGGGATATGCAGAAGGTGCAACGACTAATCGTATAC-CAC 135585
Query 77937 TAGAACAGTCTATGAAAC-AACACGAGCGC 77965
||||||||| ||||| | ||||||||||
Sbjct 135586 TAGAACAGT-GATGAAGCGGACACGAGCGC 135614
Score = 105 bits (116), Expect = 7e-18
Identities = 159/224 (71%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 105186 ATGTTGAATTTTATTGGAAGAGGTAGCGCGTTTAATACAGAAGAAGGAAACAACAGTGCA 105245
||| | |||||||||||||||||||| || ||||| ||| |||||||||||||| | ||
Sbjct 193853 ATGCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAGGAAACAACTGCGCT 193912
Query 105246 TATTTTGTACATGAAGGAGAGTTAATCCTTATTGATTGCGGCAGT--AACATTTTTGATA 105303
||| || | | || | | || | | ||||||||||| ||| |||| || |
Sbjct 193913 TATATTAAAAAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTTCAACA--TTCGGCC 193970
Query 105304 GGTTAAAGGCTTCTAGGATGTTAGATGTATTCAAAAGAGTACGAGTGATTATCACACATA 105363
| |||| | |||| | |||||| | | || |||| || | |||| |||
Sbjct 193971 GCTTAATTGAATCTAAATTACTAGATGAAGTGAAGCAAGTAACTGTACTACTCACTCATT 194030
Query 105364 CACACCCAGACCATATCGGTTCATTAGGTGATTTAATTTTCTAT 105407
||| || |||||| | |||||| |||| |||||||||||||||
Sbjct 194031 TACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTAT 194074
>seq149378
Length=35185
Score = 109 bits (120), Expect = 5e-19
Identities = 281/417 (67%), Gaps = 12/417 (3%)
Strand=Plus/Plus
Query 19860 TATATGGCAAGTTTAGCTAACCAAACAGTCCAATCAGCAAATACCGTAT--ATTTCATGA 19917
|||||||||| | || || ||||| || || | | || |||||| || ||||||
Sbjct 32788 TATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGA 32845
Query 19918 TTAAAAACGTTCCGATTGCTCGTGCTCAATCTATCAGTTCAGAGCGTTCATTCGGTACTC 19977
|||| |||| |||| |||||||||||| | | | || || ||||||||||| |
Sbjct 32846 TTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCC 32905
Query 19978 AAGGTGTTTACGAGATTGGTTCTATCATGCCAAAAGAGCACGTTTACTT-ACGT-TACGA 20035
||||||| || || ||||||| ||||||||| | || ||||| | ||| | || ||||
Sbjct 32906 AAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACG- 32964
Query 20036 AGGTACTGTTACGGTAGAACGTTTCCGTATGCGTAAAGAAAACTTAGCAGCT-TTAGGAT 20094
||||| || | || ||||||| || | |||| | || | | | | | |||
Sbjct 32965 -GGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGAT 33023
Query 20095 TCGCGGCTTTAGGTGAAGAAGTACTACAAATGGACATCATGGATATCGTTCTTTACGATA 20154
| | ||| |||||||||| || | | || || ||| | ||||| | || | ||||
Sbjct 33024 T-ACTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATA 33082
Query 20155 ACATCACATCCGAAGTAGTTATCGCTTACCGTGGATGTTCAATCGATACATACAGTGAAT 20214
|| || | || | ||| || |||||||| ||||| | || ||| |||
Sbjct 33083 ACCAAACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAA 33142
Query 20215 CTGTATC-TGTTGGTGAAATCAGTTCTGAGTCTGCTCGATTCTACTTCTTGACATCA 20270
|| |||| | | || || | | ||| ||||| | |||||||| |||||| |||
Sbjct 33143 CT-TATCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCA 33198
Score = 93.3 bits (102), Expect = 4e-14
Identities = 256/385 (66%), Gaps = 18/385 (5%)
Strand=Plus/Plus
Query 13205 AAATCTATCGAGTGGGCTATTTTTTATGGTGACGCAGCATTATCATCTGAGGCTGATGGA 13264
||| |||| || |||||||| || ||||||||| | | ||| | ||| | | ||
Sbjct 26068 AAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGCTGGTGAAAAGGGC 26127
Query 13265 CAAGCAGGTATCGAGTTCGATGGCTTACATAAACTGATTGACCAAGATACAAACGTAATC 13324
| | || | || || |||||||| || || || ||||| ||| || ||
Sbjct 26128 GATG---GTCTGGAATTTGATGGCTTGCAAAAGCTTATTGATGCTCATAACCAC---ATT 26181
Query 13325 GACCTTAAAGGTGCTCGTTTAGACG----AAGCTACTTTAAACAAAGCAGCAGTTATTGT 13380
|||||| |||||| ||| ||| ||| | ||| |||||||| || |||| |
Sbjct 26182 GACCTTGAAGGTGGAGAATTA-ACGCCACAAG-TGCTT--AACAAAGCCGCTGTTAAGAT 26237
Query 13381 TGGTAAAGGTTATGGTCGCGCTACTGATGCGTTTATGCCGATAGGGGTGCAAGCTGACTT 13440
|||| |||||| ||| || |||||||| | |||||| || || || | ||||||||
Sbjct 26238 TGGTGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTT 26297
Query 13441 CACGAATAATCTATTAGACCGTCAACGTGTAATTCAACC--GTCAACTGCTGGTGGATTC 13498
| || | | |||| |||||| | || | || ||||| ||||||| |
Sbjct 26298 TATCAACCAACACTTAGGTGCACAACGTATTATGCTTCCCGGTCAAA--CTGGTGGTATG 26355
Query 13499 TCAACTGGTTTCTCTATTAACCAATTCTTATCTACTCGTGGTGCAATCAACTTACATGGT 13558
||||||||| ||| ||| |||||||| | |||||| || || || ||||||
Sbjct 26356 GAAACTGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGT 26415
Query 13559 TCAACAATCATGGAGAATGATAACA 13583
||||| || ||||| |||||||
Sbjct 26416 TCAACTATTATGGACTTGGATAACA 26440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 490905109271360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |