Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018856.1 Length=153962 Score E Sequences producing significant alignments: (Bits) Value seq158858 111 2e-19 seq149378 109 5e-19 >seq158858 Length=235449 Score = 111 bits (122), Expect = 2e-19 Identities = 118/150 (79%), Gaps = 8/150 (5%) Strand=Plus/Plus Query 77822 GATTGGGCGCTTTAAACTCCGTGAATTCAGAGGAAGCCTAAGTCGTAAGA----TATGGT 77877 ||||| | | ||||| | |||||||||| ||||||||| || || || |||||| Sbjct 135467 GATTGCGTTCGTTAAATTGGGTGAATTCAGGGGAAGCCTACGTGCTATGAAGCATATGGT 135526 Query 77878 AATTCTGAGCCAAGCTTAACAGGGATGTTAAGAAGGTGCAACGACTAAT-GTATACGGAC 77936 ||| ||||||| |||| | |||||| | ||||||||||||||||||| |||||| || Sbjct 135527 AATCCTGAGCCGAGCTGCATAGGGATATGCAGAAGGTGCAACGACTAATCGTATAC-CAC 135585 Query 77937 TAGAACAGTCTATGAAAC-AACACGAGCGC 77965 ||||||||| ||||| | |||||||||| Sbjct 135586 TAGAACAGT-GATGAAGCGGACACGAGCGC 135614 Score = 105 bits (116), Expect = 7e-18 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 105186 ATGTTGAATTTTATTGGAAGAGGTAGCGCGTTTAATACAGAAGAAGGAAACAACAGTGCA 105245 ||| | |||||||||||||||||||| || ||||| ||| |||||||||||||| | || Sbjct 193853 ATGCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAGGAAACAACTGCGCT 193912 Query 105246 TATTTTGTACATGAAGGAGAGTTAATCCTTATTGATTGCGGCAGT--AACATTTTTGATA 105303 ||| || | | || | | || | | ||||||||||| ||| |||| || | Sbjct 193913 TATATTAAAAAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTTCAACA--TTCGGCC 193970 Query 105304 GGTTAAAGGCTTCTAGGATGTTAGATGTATTCAAAAGAGTACGAGTGATTATCACACATA 105363 | |||| | |||| | |||||| | | || |||| || | |||| ||| Sbjct 193971 GCTTAATTGAATCTAAATTACTAGATGAAGTGAAGCAAGTAACTGTACTACTCACTCATT 194030 Query 105364 CACACCCAGACCATATCGGTTCATTAGGTGATTTAATTTTCTAT 105407 ||| || |||||| | |||||| |||| ||||||||||||||| Sbjct 194031 TACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTAT 194074 >seq149378 Length=35185 Score = 109 bits (120), Expect = 5e-19 Identities = 281/417 (67%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 19860 TATATGGCAAGTTTAGCTAACCAAACAGTCCAATCAGCAAATACCGTAT--ATTTCATGA 19917 |||||||||| | || || ||||| || || | | || |||||| || |||||| Sbjct 32788 TATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGA 32845 Query 19918 TTAAAAACGTTCCGATTGCTCGTGCTCAATCTATCAGTTCAGAGCGTTCATTCGGTACTC 19977 |||| |||| |||| |||||||||||| | | | || || ||||||||||| | Sbjct 32846 TTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCC 32905 Query 19978 AAGGTGTTTACGAGATTGGTTCTATCATGCCAAAAGAGCACGTTTACTT-ACGT-TACGA 20035 ||||||| || || ||||||| ||||||||| | || ||||| | ||| | || |||| Sbjct 32906 AAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACG- 32964 Query 20036 AGGTACTGTTACGGTAGAACGTTTCCGTATGCGTAAAGAAAACTTAGCAGCT-TTAGGAT 20094 ||||| || | || ||||||| || | |||| | || | | | | | ||| Sbjct 32965 -GGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGAT 33023 Query 20095 TCGCGGCTTTAGGTGAAGAAGTACTACAAATGGACATCATGGATATCGTTCTTTACGATA 20154 | | ||| |||||||||| || | | || || ||| | ||||| | || | |||| Sbjct 33024 T-ACTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATA 33082 Query 20155 ACATCACATCCGAAGTAGTTATCGCTTACCGTGGATGTTCAATCGATACATACAGTGAAT 20214 || || | || | ||| || |||||||| ||||| | || ||| ||| Sbjct 33083 ACCAAACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAA 33142 Query 20215 CTGTATC-TGTTGGTGAAATCAGTTCTGAGTCTGCTCGATTCTACTTCTTGACATCA 20270 || |||| | | || || | | ||| ||||| | |||||||| |||||| ||| Sbjct 33143 CT-TATCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCA 33198 Score = 93.3 bits (102), Expect = 4e-14 Identities = 256/385 (66%), Gaps = 18/385 (5%) Strand=Plus/Plus Query 13205 AAATCTATCGAGTGGGCTATTTTTTATGGTGACGCAGCATTATCATCTGAGGCTGATGGA 13264 ||| |||| || |||||||| || ||||||||| | | ||| | ||| | | || Sbjct 26068 AAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGCTGGTGAAAAGGGC 26127 Query 13265 CAAGCAGGTATCGAGTTCGATGGCTTACATAAACTGATTGACCAAGATACAAACGTAATC 13324 | | || | || || |||||||| || || || ||||| ||| || || Sbjct 26128 GATG---GTCTGGAATTTGATGGCTTGCAAAAGCTTATTGATGCTCATAACCAC---ATT 26181 Query 13325 GACCTTAAAGGTGCTCGTTTAGACG----AAGCTACTTTAAACAAAGCAGCAGTTATTGT 13380 |||||| |||||| ||| ||| ||| | ||| |||||||| || |||| | Sbjct 26182 GACCTTGAAGGTGGAGAATTA-ACGCCACAAG-TGCTT--AACAAAGCCGCTGTTAAGAT 26237 Query 13381 TGGTAAAGGTTATGGTCGCGCTACTGATGCGTTTATGCCGATAGGGGTGCAAGCTGACTT 13440 |||| |||||| ||| || |||||||| | |||||| || || || | |||||||| Sbjct 26238 TGGTGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTT 26297 Query 13441 CACGAATAATCTATTAGACCGTCAACGTGTAATTCAACC--GTCAACTGCTGGTGGATTC 13498 | || | | |||| |||||| | || | || ||||| ||||||| | Sbjct 26298 TATCAACCAACACTTAGGTGCACAACGTATTATGCTTCCCGGTCAAA--CTGGTGGTATG 26355 Query 13499 TCAACTGGTTTCTCTATTAACCAATTCTTATCTACTCGTGGTGCAATCAACTTACATGGT 13558 ||||||||| ||| ||| |||||||| | |||||| || || || |||||| Sbjct 26356 GAAACTGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGT 26415 Query 13559 TCAACAATCATGGAGAATGATAACA 13583 ||||| || ||||| ||||||| Sbjct 26416 TCAACTATTATGGACTTGGATAACA 26440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490905109271360