Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018857.1 Length=158305 Score E Sequences producing significant alignments: (Bits) Value seq158858 95.1 1e-14 >seq158858 Length=235449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 5303 TTCGATAAATCTAAAGATTATCTAATGTTCCCAGATGGTGGAGCGGAAAAACGTTATAAG 5362 || |||||| ||||||||| || | ||||| |||| ||| || |||||||||||| Sbjct 212987 TTTGATAAAGAAAAAGATTATGTACTATTCCCGGATGCTGGTGCTCAAAAACGTTATAGT 213046 Query 5363 AATCTAAAAGGATTCAAAACG--TTAGTAGGTCACAAGAAGCGAGACTTCGAAACTGGTA 5420 |||||| | ||| || | |||||||| | ||||| || || | ||||| || | Sbjct 213047 AATCTAG--GCATTACTAATGAATTAGTAGGGCTTAAGAAACGTAACGTTGAAACAGGGA 213104 Query 5421 ATATCATAAGCTTTGAAGTTTACGGAGAAATGGAACGTGGTCACAAAGTTATTATTCTAG 5480 | ||| |||| | || || || || || ||| |||||||||||| | ||||| | Sbjct 213105 AAATCGAAAGCATAAAAATTATTGGTGACATCAAACCAGGTCACAAAGTTGTAATTCTTG 213164 Query 5481 ATGACTTAATTTC 5493 ||||| ||| ||| Sbjct 213165 ATGACCTAAGTTC 213177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 508/798 (64%), Gaps = 23/798 (3%) Strand=Plus/Plus Query 6312 ACATGATTTCTCAATGCGCGGTATGGGTTCATTACAGACTACAGAGAAATCTGGTTCTGG 6371 ||| |||||||| |||||||| ||| | ||| || || | | ||| | || Sbjct 214161 ACACGATTTCTCTATGCGCGGAATGAGCAGCTTAGAGTCTGCTATGGCGAGTGGAGCAGG 214220 Query 6372 TCACTTATTATCATTCGTTGGTACTGACAGCATTCCAGCTATCGTGTATTTAGAAAAATA 6431 ||||||||||||||||| || || || | |||||||||| | ||| | || | || Sbjct 214221 ACACTTATTATCATTCGTAGGAACAGATACGGTTCCAGCTATTGCTTATCTTGAGCATTA 214280 Query 6432 CTATAAAGCTAATGTTGAAACAGAATTAGTAGCAGGTTCTGTAAGCGCGACTGAACATAG 6491 || || || || |||||| |||||||||| | || || || ||||||||| Sbjct 214281 TTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACATTC 214340 Query 6492 TGTTATGTGCGCATCAGCAGGTGAAGA---CTTAGATGAGTACGAAACATTCAAACGATT 6548 ||||||| ||| ||| || ||| | ||||| | ||||| | ||| || | Sbjct 214341 AGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCGTCT 214400 Query 6549 AATTACAGAAGTATACCCTACTGGTATTGTAAGTATCGTATCTGATTCATTTGACTTCTG 6608 || || || ||||| |||| || | | ||| | || || || | | ||| ||||| Sbjct 214401 TATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTTCTG 214460 Query 6609 GGACAAT-GTATCTCGTGTTCTACC-AAAATTAGCTGAA-GAAATTAAAGGTCGTGACGG 6665 || || | ||| |||| || ||| ||| ||||| | | ||||| || Sbjct 214461 GG-CAGTAGTAGGAGAAATTCTTCCTCGTCTTA--AGAAGGAAATCATGGAACGTGATGG 214517 Query 6666 TAAAGTTGTAGTTCGTCCGGACTCAGGTATTCCAGAAGATA-TCTTATGTGGTGACCCTA 6724 | | || ||||||| || || || | || ||||| |||| |||| Sbjct 214518 TCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTA-CTGGTAACCCAG 214576 Query 6725 ACGCAGATAACA-AGTGGGCTCGTATGGGATTAGTAGCCGCATTAGCACACTTCTTCGGA 6783 | ||| | |||| | | |||| ||| || | | || ||| | |||| || Sbjct 214577 AAGCA-AAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTGGT 214635 Query 6784 TATACAGTTAATAGCAAGGGATACAAAGTGTTACCACCTTATATCGGTGCAATCTACGGA 6843 ||| ||| | ||||| || ||| | ||| || |||| ||||||||||| || Sbjct 214636 GGAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATGGT 214695 Query 6844 GATTCTATCACTTATGAGCGTATGATTACTATCTACTCTCG----TTTAGAAGCAGCAGG 6899 || ||||| ||| ||||||| | | ||| | | | ||||||| | ||| Sbjct 214696 GACTCTATTACTCTTGAGCGT----GCAAAAGCTATTGTTGAGAAGTTAGAAGAAAAAGG 214751 Query 6900 ATTCTCTATCGA-AAACGTAGTATTAGGAGTAGGTTCTTACACTTATGCTTACAATACTC 6958 || || || | |||||| || || || || || ||||| |||| || | |||| Sbjct 214752 CTTTGCT-TCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTC 214810 Query 6959 GTGACTCTTTAGGATTCGCGATGAAGGCGACGTGGGCGCAAATTAAAGGCGAAGAGAAAT 7018 | || ||| |||| || || ||||| || || | || | | || || ||||| | Sbjct 214811 GCGATTCTCTAGGGTTTGCTATGAAAGCTACATATGCTGTAGTAAATGGAGAAGAACGTT 214870 Query 7019 TAATCCAAAAGAATCCTAAGACTGATGATGGAACTAAAAAATCTAACAAAGGTCGCGTAG 7078 || | ||| |||| || || |||||||||||||| |||||| | || ||||||| Sbjct 214871 TATTGTTCAAGGATCCAAAAACAGATGATGGAACTAAGAAATCTCAACGTGGCCGCGTAG 214930 Query 7079 CTGTAGTAGAACAGGATG 7096 ||| |||| | |||| Sbjct 214931 TAGTAACAGAAGATGATG 214948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504756286423200