Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_018857.1
Length=158305
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 95.1 1e-14
>seq158858
Length=235449
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 5303 TTCGATAAATCTAAAGATTATCTAATGTTCCCAGATGGTGGAGCGGAAAAACGTTATAAG 5362
|| |||||| ||||||||| || | ||||| |||| ||| || ||||||||||||
Sbjct 212987 TTTGATAAAGAAAAAGATTATGTACTATTCCCGGATGCTGGTGCTCAAAAACGTTATAGT 213046
Query 5363 AATCTAAAAGGATTCAAAACG--TTAGTAGGTCACAAGAAGCGAGACTTCGAAACTGGTA 5420
|||||| | ||| || | |||||||| | ||||| || || | ||||| || |
Sbjct 213047 AATCTAG--GCATTACTAATGAATTAGTAGGGCTTAAGAAACGTAACGTTGAAACAGGGA 213104
Query 5421 ATATCATAAGCTTTGAAGTTTACGGAGAAATGGAACGTGGTCACAAAGTTATTATTCTAG 5480
| ||| |||| | || || || || || ||| |||||||||||| | ||||| |
Sbjct 213105 AAATCGAAAGCATAAAAATTATTGGTGACATCAAACCAGGTCACAAAGTTGTAATTCTTG 213164
Query 5481 ATGACTTAATTTC 5493
||||| ||| |||
Sbjct 213165 ATGACCTAAGTTC 213177
Score = 89.7 bits (98), Expect = 5e-13
Identities = 508/798 (64%), Gaps = 23/798 (3%)
Strand=Plus/Plus
Query 6312 ACATGATTTCTCAATGCGCGGTATGGGTTCATTACAGACTACAGAGAAATCTGGTTCTGG 6371
||| |||||||| |||||||| ||| | ||| || || | | ||| | ||
Sbjct 214161 ACACGATTTCTCTATGCGCGGAATGAGCAGCTTAGAGTCTGCTATGGCGAGTGGAGCAGG 214220
Query 6372 TCACTTATTATCATTCGTTGGTACTGACAGCATTCCAGCTATCGTGTATTTAGAAAAATA 6431
||||||||||||||||| || || || | |||||||||| | ||| | || | ||
Sbjct 214221 ACACTTATTATCATTCGTAGGAACAGATACGGTTCCAGCTATTGCTTATCTTGAGCATTA 214280
Query 6432 CTATAAAGCTAATGTTGAAACAGAATTAGTAGCAGGTTCTGTAAGCGCGACTGAACATAG 6491
|| || || || |||||| |||||||||| | || || || |||||||||
Sbjct 214281 TTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACATTC 214340
Query 6492 TGTTATGTGCGCATCAGCAGGTGAAGA---CTTAGATGAGTACGAAACATTCAAACGATT 6548
||||||| ||| ||| || ||| | ||||| | ||||| | ||| || |
Sbjct 214341 AGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCGTCT 214400
Query 6549 AATTACAGAAGTATACCCTACTGGTATTGTAAGTATCGTATCTGATTCATTTGACTTCTG 6608
|| || || ||||| |||| || | | ||| | || || || | | ||| |||||
Sbjct 214401 TATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTTCTG 214460
Query 6609 GGACAAT-GTATCTCGTGTTCTACC-AAAATTAGCTGAA-GAAATTAAAGGTCGTGACGG 6665
|| || | ||| |||| || ||| ||| ||||| | | ||||| ||
Sbjct 214461 GG-CAGTAGTAGGAGAAATTCTTCCTCGTCTTA--AGAAGGAAATCATGGAACGTGATGG 214517
Query 6666 TAAAGTTGTAGTTCGTCCGGACTCAGGTATTCCAGAAGATA-TCTTATGTGGTGACCCTA 6724
| | || ||||||| || || || | || ||||| |||| ||||
Sbjct 214518 TCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTA-CTGGTAACCCAG 214576
Query 6725 ACGCAGATAACA-AGTGGGCTCGTATGGGATTAGTAGCCGCATTAGCACACTTCTTCGGA 6783
| ||| | |||| | | |||| ||| || | | || ||| | |||| ||
Sbjct 214577 AAGCA-AAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTGGT 214635
Query 6784 TATACAGTTAATAGCAAGGGATACAAAGTGTTACCACCTTATATCGGTGCAATCTACGGA 6843
||| ||| | ||||| || ||| | ||| || |||| ||||||||||| ||
Sbjct 214636 GGAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATGGT 214695
Query 6844 GATTCTATCACTTATGAGCGTATGATTACTATCTACTCTCG----TTTAGAAGCAGCAGG 6899
|| ||||| ||| ||||||| | | ||| | | | ||||||| | |||
Sbjct 214696 GACTCTATTACTCTTGAGCGT----GCAAAAGCTATTGTTGAGAAGTTAGAAGAAAAAGG 214751
Query 6900 ATTCTCTATCGA-AAACGTAGTATTAGGAGTAGGTTCTTACACTTATGCTTACAATACTC 6958
|| || || | |||||| || || || || || ||||| |||| || | ||||
Sbjct 214752 CTTTGCT-TCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTC 214810
Query 6959 GTGACTCTTTAGGATTCGCGATGAAGGCGACGTGGGCGCAAATTAAAGGCGAAGAGAAAT 7018
| || ||| |||| || || ||||| || || | || | | || || ||||| |
Sbjct 214811 GCGATTCTCTAGGGTTTGCTATGAAAGCTACATATGCTGTAGTAAATGGAGAAGAACGTT 214870
Query 7019 TAATCCAAAAGAATCCTAAGACTGATGATGGAACTAAAAAATCTAACAAAGGTCGCGTAG 7078
|| | ||| |||| || || |||||||||||||| |||||| | || |||||||
Sbjct 214871 TATTGTTCAAGGATCCAAAAACAGATGATGGAACTAAGAAATCTCAACGTGGCCGCGTAG 214930
Query 7079 CTGTAGTAGAACAGGATG 7096
||| |||| | ||||
Sbjct 214931 TAGTAACAGAAGATGATG 214948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504756286423200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |