Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018860.1 Length=156176 Score E Sequences producing significant alignments: (Bits) Value seq158858 637 5e-178 seq78791 273 2e-68 seq149378 118 1e-21 seq45857 86.0 6e-12 >seq158858 Length=235449 Score = 637 bits (706), Expect = 5e-178 Identities = 637/824 (77%), Gaps = 4/824 (0%) Strand=Plus/Minus Query 43888 AGAGTAACCTTCACATCGTAACGTTGTGTCTCAGTTGTTAGGATGTTTAAGTCACCGATA 43947 ||| | || || || || || ||||||| || ||||||| ||| ||||| ||||| ||| Sbjct 172409 AGAATCACTTTAACGTCATATCGTTGTGAATCTGTTGTTAAGATATTTAAATCACCAATA 172350 Query 43948 GAAGAGCGGAATGTGTAACCTTCGTTTAACTCGAATGCGATCGCACGTAAGCTATCATAG 44007 | ||| |||||||| ||||| || ||||| || || || |||||||||||||| || || Sbjct 172349 GCAGAACGGAATGTATAACCCTCATTTAATTCAAACGCAATCGCACGTAAGCTGTCGTAA 172290 Query 44008 TTAAGTTTCACACGGTTTGCAAACGATACAACATGTTTGATTTCACCGTGGTACTGCTCG 44067 || | || ||||| |||||||| | ||||||||| ||||||||||| || ||||| || Sbjct 172289 TTTAACTTTACACGATTTGCAAATGCTACAACATGCTTGATTTCACCATGATACTGTTCA 172230 Query 44068 TCCACTTTGTCACGTAAGTAGATTTCAACTTCAGCAGATGATGGATAGTCGAAACGGATA 44127 | | |||||| || ||||||||||| ||||| || | |||||| || || |||||| Sbjct 172229 GCAATTTTGTCTTTTAGGTAGATTTCAATTTCAGTAGCAGTTGGATAATCAAATCGGATA 172170 Query 44128 TGGTAATGGAATCGACCAGGACGACTAAGCATGAAGCTATTTACTTTATGTAAATCGTTA 44187 ||||||||||||||||||||||| || | ||| || |||||| |||| | |||||| Sbjct 172169 TGGTAATGGAATCGACCAGGACGGCTTAACATAAACTCATTTACCTTATTAAGATCGTTT 172110 Query 44188 ACTGTGATAGCATACATACGTTTCTTTTGAGATGTACCATCGAATAGTCCTAGTAAACTG 44247 || || || ||||| ||||||||||| ||||| |||||||| |||| || ||||| | Sbjct 172109 ACCGTAATCGCATAGATACGTTTCTTCTGAGAAGTACCATCAAATAACCCCAGTAAGTTT 172050 Query 44248 TCTTGCTTTTCTGCATCTTCATTACGTGGGTTGAACATCTTTTCAAATTCATCGAATACA 44307 || || |||||||| ||||||||||| || ||||||||||||||||| ||||| || | | Sbjct 172049 TCCTGTTTTTCTGCTTCTTCATTACGAGGATTGAACATCTTTTCAAACTCATCCAAGATA 171990 Query 44308 ACTAAGCATTCCTGGTCAATCGATTCAATGAAGTCTGCAATCCCTGGGTACGCTTTTGGA 44367 | ||| ||| |||||||| ||||||||| || |||||||||||| | || |||| | Sbjct 171989 ATTAATGCTTCTTGGTCAATTTGTTCAATGAAATCAGCAATCCCTGGGAATGCCTTTGTA 171930 Query 44368 ACCATGATAACAGGAATGTCTAAATCCTCTACAACTCGTTCACCAATTAACTGCACGAAC 44427 ||||| ||||| || || || | | |||||| ||| |||| | || || ||| Sbjct 171929 ACCATAATAACCGGGATTTC---CTTTTTAACAACTGCTTCTGCAATAAGTTGAACAAAC 171873 Query 44428 ATTGATTTACCCATACCTTTGTGACCACTTAATATGATACCTAAGCTACGATCGAACTTG 44487 || ||||||||||| ||||||| |||||| || || | |||||||||||| || || || Sbjct 171872 ATAGATTTACCCATTCCTTTGTTACCACTCAAGATAAGACCTAAGCTACGTTCAAATTTT 171813 Query 44488 TTGTATGATTTTAGAACTTTATCAATCTTCTCCTGGTGGCTACCGTAAATCTTTTCTTCT 44547 | |||||||||| ||||||| ||| || || |||| || || ||||||||| |||| Sbjct 171812 TCATATGATTTTAATACTTTATTAATTTTTTCTGGGTGACTTCCATAAATCTTTGCTTCC 171753 Query 44548 TTAGATACAAAGTTGTCAATTCTTTCTAAGAAGAAGCCTGATCGTGGGTGGAACTCTGCT 44607 | ||| ||||||| ||||| | ||||| |||| ||||||| ||| | ||| ||| || Sbjct 171752 GTTGATTCAAAGTTATCAATCTTCTCTAAAGAGAAACCTGATCTTGGATTGAATTCTACT 171693 Query 44608 TTGTATGTACCCGCAGGTAATTTATCGTAAGTTTTTAAGTCATCCCCATAGATTCTGTAT 44667 ||||||||| | || |||| ||| || ||||||||||||||||| || || ||| | || Sbjct 171692 TTGTATGTAGCAGCTGGTAGTTTGTCATAAGTTTTTAAGTCATCACCGTAAATTTTATAA 171633 Query 44668 GTAGTACCAACGCTAACGATTTTCATAATAATTTTTCTCCTCTT 44711 ||| | || | | ||| |||||||| | || || ||||| || Sbjct 171632 GTACTTCCGAAGTTAATAATTTTCAT-TTTATATTGCTCCTTTT 171590 Score = 333 bits (368), Expect = 3e-86 Identities = 518/735 (70%), Gaps = 4/735 (1%) Strand=Plus/Minus Query 77057 TTTAGATAAACGTATTGGTTGATATAGTCAGGTTGCTGAGAAAAGATTGGTGTGTCATAA 77116 |||| |||||| |||| | | ||| || | | | ||||| || || || |||| | Sbjct 147704 TTTAAGTAAACGAATTGTTCAACATATTCGCGGTCTTTAGAAATAATAGGAGTTTCATGA 147645 Query 77117 TCTACTGCCCAACGACTTCTCTGTGCTCCGTTCTTCTCATAATATTCTTTAACGATACAA 77176 ||||||| ||| |||||||| || || ||||| || || | ||||||| ||| || Sbjct 147644 TCTACTGACCATCGACTTCTTAAAGCACCATTCTTTTCGTAGAACTCTTTAATGATGCAT 147585 Query 77177 GCTCCTCGTTTCTGCCATACAGGTAGATCATTCCAGTTAATGTCTTTCTCTAACATAAGC 77236 || ||||| ||||||||||||| ||||||||||| || | |||||| ||| | | Sbjct 147584 ATACCACGTTTTTGCCATACAGGTAAGTCATTCCAGTTGATATTTTTCTCAGTCATTAAC 147525 Query 77237 TTATCTTGCATTGCCTTTCCATCTAGACCTTGCAGAGCTTTGTGTGGGAAGATAGACTGT 77296 ||||| ||||| |||| |||| || ||||||| || ||||| ||| ||| || Sbjct 147524 TTATCCTGCATATCCTTACCATTAAGGCCTTGCAATTGCTTATGTGGAAAGTTAGCTTGA 147465 Query 77297 GCTACCATCGCTACGCTGTTCTTAGAAGCGTCCTGCTGTCTCCATAAGAAGTAGTTATTA 77356 || ||||| | | ||| ||||| ||||| || || |||||||| | ||| ||||| | Sbjct 147464 GCAACCATTGAGATGCTATTCTTTGAAGCATCTTGTTGTCTCCAAATGAAATAGTTTGCA 147405 Query 77357 ACCTCATCTTGTGGAAGCACCCAAGCTCTAGCATCGAATAATGCTAACTCTTTATCAGGG 77416 |||||||||||||| | ||| || | | |||| ||| || | ||| || || Sbjct 147404 ACCTCATCTTGTGGCAATACCTGTGCGCGACCATCAAATGTAGCAAGTGGTTTGTCCGGA 147345 Query 77417 TATACACCTCTCATGATTTCATTGAACTTTGCTGTAGCCATTGAAGCTGCAACCGATACG 77476 ||| ||||||| | |||||| |||||||| || ||||| ||||| | ||| || | Sbjct 147344 TATTTCTCTCTCATAACTTCATTAAACTTTGCAGTTGCCATAGAAGCCGAAACAGAAGCT 147285 Query 77477 ATCTTCTGTAAGTTGTTATCGAACCAAGATTGTGTTGACAGCTTATCGTAGTTTGTGATT 77536 ||||| || | ||| || || ||||||||||| |||| ||||| || ||||| || || Sbjct 147284 ATCTTTTGAAGGTTATTTTCAAACCAAGATTGAGTTGTAAGCTTGTCATAGTTCGTAATA 147225 Query 77537 AGTAGGCTGATTTCATCTGACTGTGTATAAGCTAACTTGCACCCCATAACGTTCTTAGCT 77596 || | || || ||||| ||||| ||| |||| || ||||||| ||| | |||| Sbjct 147224 AGAATACTAATCTCATCCGACTGATGGTAAACTAATTTCGCGCCCATAATGTTTTGAGCT 147165 Query 77597 AGGTACTGACATGTTCCCCACATTGCTGCTGCTA-ACACTGCATCGAACGGTCTTTCCAT 77655 | ||| | |||||| |||| | |||| |||||| | ||| || || || | | Sbjct 147164 AAGTATTTGCATGTTTCCCAAAATGCTTCTGCTAGATCCTG-GTCAAAAGGCTTAGCGCA 147106 Query 77656 TCCTTTAGTATAAGTGTGGAA-TGCCTTACCATCGATTCTGATAACCACAGGCATTCTTT 77714 ||||| ||||| || || || || | ||||| || || | || ||| |||||||||| Sbjct 147105 ACCTTTTGTATATGTATGAAAGTGTGCT-CCATCAATCCTTACAATCACGGGCATTCTTT 147047 Query 77715 TCGGTAATTTCGTTCTATAAGAGTTTTCATAACCTTTCATACGATCTCCAAATGTTCCCA 77774 ||||| || | | ||| | || || || | ||||| |||||||||| | ||| Sbjct 147046 CAGGTAACTTAATGCGATATGCATTCTCGTATCTCTTCATGCGATCTCCAATGCTGTCCA 146987 Query 77775 TTGTATATTCCTCCT 77789 || |||||||||| Sbjct 146986 TTAACTATTCCTCCT 146972 Score = 111 bits (122), Expect = 2e-19 Identities = 253/379 (67%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 93159 TTGGCAAAACCACCGAATC--TACCTTTAACAAGTTTAGACAGGAATAAGTGTCTATTGT 93216 || ||| | |||||||||| ||| |||| ||| || | ||||||||| | || | Sbjct 232845 TTTGCATATCCACCGAATCGGTAC--TTAATGTTTTTTGATAAGAATAAGTGACGGTTAT 232788 Query 93217 CAATTAATAGTTGACCTAGCGGACTGACTTTCATGTAGTCCTGCGGTCTTGTAAATAATA 93276 | ||||| | ||| || || ||| | || || ||||| |||| ||| | ||||| | Sbjct 232787 CGATTAAGATTTGTCCGAGTGGAGTAACCTTGATGTAATCCTCCGGACGAACAAATAGGA 232728 Query 93277 ACTCAATACTGTTTGGTGAGCTTGACATGGCATCCTTTACAAACTTGTTGATAGGGTCTA 93336 ||| || | || ||| |||| ||| ||||| | ||||||||||| | | | | Sbjct 232727 TCTCGATGTTATTAGGTACGCTTTGCATAGCATCTCTAACAAACTTGTTCACATGAATGA 232668 Query 93337 CTCTAATATCTACGGAATCTTTCGTGCTTCTAAAGTTTTTCGACCCTACATTATCATAAC 93396 | | ||| || ||| |||||| |||| |||||||| ||| | | || Sbjct 232667 TGTTTACATCGACATCATCCTTCGTGTTTCTGAAGTTTTTACCACCTGATGTGTTGTACT 232608 Query 93397 CTTTAAAGGACTCAAGCCCTAAGTAGTAATCAATAGGTGGGATACATACACCTCTGAAGT 93456 | ||||| || || | |||||||| || |||| |||||||| |||||||| | ||| Sbjct 232607 CATTAAATGAATCCAAACCTAAGTAATACTCAACTGGTGGGATGCATACACCCTTATAGT 232548 Query 93457 CATGATCTGAGTCTTCTGTCTCTGTCCCGTTAGCACGAGAACCATACGGAGCTAAAATAA 93516 | | |||||| ||||| ||||| || | ||| | ||| |||| || | | Sbjct 232547 CCTTATCTGATGTATCTGTATCTGTTCCATAGGCATAACTACCTGTAGGAGACAAGAGGA 232488 Query 93517 TCGTTCTGTCTTCCATCCA 93535 | ||||| ||||| | ||| Sbjct 232487 TTGTTCTATCTTCTAACCA 232469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/96 (82%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 906 GTGAAAACCATAAACATAAACAAATG--CGGGTGGCAGGACTTGAACCTGCGACTTCTTG 963 |||||| | |||||||||||||| | ||| || || || | |||| |||||| |||| Sbjct 162744 GTGAAATACCTAAACATAAACAAAAGTCCGGATGACACGATTCGAACATGCGACCCCTTG 162685 Query 964 CTCCCAAAGCAAGCGCTCTAGCCAATCTGAGCTACA 999 ||||||||||||| |||||| |||| |||||||||| Sbjct 162684 CTCCCAAAGCAAGTGCTCTA-CCAAGCTGAGCTACA 162650 >seq78791 Length=51567 Score = 273 bits (302), Expect = 2e-68 Identities = 337/461 (73%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 11208 GTTCATGGTGGGCATAACTCAATCGTACAAGGTGCTAACTACGGTAGCAGAAAAGAACAC 11267 || || || || || |||||||| || ||||||||||||| || ||||||||| ||| Sbjct 38739 GTACACGGAGGTCACAACTCAATTGTCCAAGGTGCTAACTCTGGGGACAGAAAAGAGCAC 38798 Query 11268 GTTATGGATCGCCAGGTTAAAGATGCTTTAATTAGCAAGCTTCGTAGTCTTGGTCACACA 11327 || |||||| | | || || || ||| |||||||||| || | | | |||||||| Sbjct 38799 GTAATGGATAGACGAGTGAAGGACGCTCTAATTAGCAAACTGAGAGCTTTAGGTCACACT 38858 Query 11328 GTTTATGACTGCACAGACGAAACAGGTTCTACACAAAGCGCTAACCTACGTAACATCGTA 11387 || || ||| ||| ||||| || |||| || | || ||| || ||||||||| Sbjct 38859 GTATACGACGACACTGACGAGGTTGGAACTACTCAGAATGCCAACTTAAACAACATCGTA 38918 Query 11388 GCGAAATGTAATGCTCATCGAGTAGACTTAGACATTTCATTACACTTAAATGCGTACAAC 11447 || || |||||| ||| ||||||||||| |||||| | ||||| || || || ||| Sbjct 38919 GCTAAGTGTAATAGCCATGCAGTAGACTTAGTTATTTCAGTTCACTTGAACGCTTATAAC 38978 Query 11448 GGTTCTGCTAACGGAGTAGAAGTTTGCTACTACGACCAACAAGCTTTAGCTGCTAAAGTG 11507 ||||| || |||||||||| ||| ||||| ||| | |||| | ||| |||| ||| Sbjct 38979 GGTTCAGCACACGGAGTAGAGGTTCTTTACTATGACAAGCAAGAGCTTGCTTCTAAGGTG 39038 Query 11508 TCTAAACAGCTTTCTGAAGACATCGGATGGTCTAACCGTGGAGCTAAACCTCGTACAGAC 11567 || ||| | ||| | || || || |||| |||||| ||||| |||| || |||||| Sbjct 39039 TCAGCTCAGTTATCTAAGGATATTGGCTGGTATAACCGAGGAGCAAAACAACGCACAGAC 39098 Query 11568 CTTTACGTATTAAATAGCACATCTGCACCTGCTATCTTAATCGAGCTTGGTTTCATCGAT 11627 | |||||| ||| || | ||||| |||||||| | || ||||| ||||| || Sbjct 39099 TTAGCTGTATTAGCTAGAACTACAGCACCAGCTATCTTGCTTGAACTTGGCTTCATTGAC 39158 Query 11628 AATGAAAGCGACATGGCTAAATGGAATGTAGATAAAATCGC 11668 ||||| ||||| |||||||||||||| || || ||||| || Sbjct 39159 AATGAGAGCGATATGGCTAAATGGAACGTTGACAAAATTGC 39199 >seq149378 Length=35185 Score = 118 bits (130), Expect = 1e-21 Identities = 165/227 (73%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 153525 TTGTGCTACCTTCATTTAGAGAGTTACC---GCTACTACCTGTAGCCCCTCCACGGTTCG 153581 |||| |||||||||| | |||||| || || || || ||||| || ||||| || | Sbjct 23326 TTGTATTACCTTCATTAACAGAGTTTCCTCCGCCACGCCCAGTAGCTCCCCCACGATTAG 23267 Query 153582 GGAAGTTAATCTCCGATGGGTCAATAGCATAAATAG-AGCAACATACGTTGATTAGGTAG 153640 | |||||||| || ||| | ||| |||| | ||||| | || | ||||||||| Sbjct 23266 GAAAGTTAATTTCTTCTGGCTGAATTTGGTAAACGGCAGCAATA-ACATAAATTAGGTAG 23208 Query 153641 TTCAACCATTTCTCAAATTCCATATC---ACGAGACGATTGTGTCATATTAACGAACTTA 153697 ||||| | || |||||||||||||| || || | |||||||| ||||| |||||| Sbjct 23207 TTCAAAAACTTTTCAAATTCCATATCCTTACTAGTC---TGTGTCATGTTAACAAACTTA 23151 Query 153698 ACATCTTCCGCAGATACTACAGGAATCTTCCAAGCACCATTGATACC 153744 |||||| | || | | |||| ||||||||| ||||| ||||| Sbjct 23150 GCATCTTGACCTGAAATCATTGGAACCTTCCAAGCGCCATTCATACC 23104 Score = 89.7 bits (98), Expect = 5e-13 Identities = 282/430 (66%), Gaps = 14/430 (3%) Strand=Plus/Minus Query 143373 GTACGTTAGCTGAAGTTAAGAAGTAGAAACGAGCGTTCTCACTAGTGATTTCGTTCGCTT 143432 ||| |||| |||||| ||| ||||||| | || |||| ||| || ||||| || Sbjct 33208 GTAAGTTACTTGAAGTCAAGTAGTAGAATTGTGCAGATTCACCAGTAATATCGTTAGCCC 33149 Query 143433 TAACATCTTCAGAGTAGCTGTCGATAGAGCATCCACGATATGCTACAATTACTTCTTGTG 143492 | | ||| |||||| ||| || |||||||||||||| | |||| | | Sbjct 33148 GATAAGTTTCTGAGTAGGTGTTAATTGAGCATCCACGATAGCAGATGATTAAGGCACCAG 33089 Query 143493 TGTAGTTATCGTAAAGTACAATGTCCATGATGTCCATTTGTAGTACTTCTTCCCCTAAAG 143552 | | |||||| | || ||| || | ||| || || | | || ||||| |||| || Sbjct 33088 TTTGGTTATCCTTAACATTAATATCTAAGATATCAATCTTCAAAACATCTTCACCTAGAG 33029 Query 143553 CAGCGAAACCTAATGTTGCCAGGTTCTCTTTC---TTCATA--CGGAAGCGCTCTACTGT 143607 ||| || || | || ||| | || | | | || || | || || |||| Sbjct 33028 CAGT--AATCT--TCTTATCAGACA-TATTACCAGTACGTAACCGATAACGTTCAACTGA 32974 Query 143608 TACAGAACCCTCATACTTCAAGTAAACGTGCTCTTGCGGCATGATCGAACCGATTTGGTA 143667 ||| | |||| |||||| ||| | ||||| || || |||||||| ||||| | || || Sbjct 32973 TACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTGAACCAAGTTCATA 32914 Query 143668 TACCCCAGTAGTACCGAAACTACGTTCTGCTGAGATAGATTGAGCACGAGCGATCGGTAC 143727 || || |||||||| || || | | | |||||||||||| | || | | Sbjct 32913 CACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCACGACCAATAACTTC 32854 Query 143728 GTTTTTAATCATGAAAT--ATACTGTATTACCAGTCTGTACCGTTTGGTTAGTTACAGAT 143785 ||| |||||||||| || |||| | ||||| || | |||||||| || | | | | Sbjct 32853 GTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGTTTGCTTTGCAAGTGTT 32796 Query 143786 GCCATGTAGT 143795 ||||| |||| Sbjct 32795 GCCATATAGT 32786 >seq45857 Length=14034 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 1350 GTGGCGGAAGGAGTGGGATTCGAACCCACGCACGCTTTTACACGCCTAGCGGTTTTCAAG 1409 |||| ||| | |||||||||||||||||||||| ||| ||||| ||||||||||| Sbjct 7911 GTGGAGGAGGCGGTGGGATTCGAACCCACGCACGGCTTTCGCCGCCTGACGGTTTTCAAG 7852 Query 1410 ACCGACCTCTTTTATCCACTTGAGTACCCTTCCA 1443 |||| ||| || | |||||||||||| | |||| Sbjct 7851 ACCGTTCTC-TTAAACCACTTGAGTACGCCTCCA 7819 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 1351 TGGCGGAAGGAGTGGGATTCGAACCCACGCACGCTTTTACACGCCTAGCGGTTTTCAAGA 1410 ||| ||| | |||||||||||||||||||||| ||| ||||| |||||||||||| Sbjct 7784 TGGAGGAGGCGGTGGGATTCGAACCCACGCACGGCTTTCGCCGCCTGACGGTTTTCAAGA 7725 Query 1411 CCGACCTCTTTTATCCACTTGAGTACCCTTCCATA 1445 ||| ||| || | |||||||||||| | ||| || Sbjct 7724 CCGTTCTC-TTAAACCACTTGAGTACGCCTCCGTA 7691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497966243559680