Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_018863.1
Length=162596
Score E
Sequences producing significant alignments: (Bits) Value
seq149378 113 5e-20
seq158858 82.4 8e-11
>seq149378
Length=35185
Score = 113 bits (124), Expect = 5e-20
Identities = 154/207 (74%), Gaps = 10/207 (5%)
Strand=Plus/Minus
Query 147921 AACGTTCTACCGTTACAGAACCTTCGTA-ACGT-AAGTATACGTGTTCCTGTGGCATGAT 147978
||||||| || | ||| | ||| |||| || | ||| |||||||||| |||||||||||
Sbjct 32986 AACGTTCAACTGATACCGTACC--CGTATACTTTAAGAATACGTGTTCATGTGGCATGAT 32929
Query 147979 TGAACCAATTTGGTAAACACCTTGAGTACCGAATGAACGTTCAG-AGCTGATAGATTGAG 148037
|||||||| || || |||||||| ||||||||||| || ||| || | || |||||||
Sbjct 32928 TGAACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAAT-GATTGAG 32870
Query 148038 CGCGGGCAATCGGAACGTTCTTAATCATGAAGT--ACACGGTATTTGCCGATTGGACAGT 148095
| || |||| ||||||||||||||| | | |||| || | | || || ||
Sbjct 32869 CACGACCAATAACTTCGTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGT 32812
Query 148096 TTGGTTAGCTAAACTTGCCATATATTC 148122
||| || || | |||||||||| ||
Sbjct 32811 TTGCTTTGCAAGTGTTGCCATATAGTC 32785
>seq158858
Length=235449
Score = 82.4 bits (90), Expect = 8e-11
Identities = 126/173 (73%), Gaps = 9/173 (5%)
Strand=Plus/Minus
Query 58723 ACTACGTTGAAACCTAACTCCTCTGCTAAT-GCTACCGGGAATCCTTTATCTAAGTGCAT 58781
||||| || || ||||| |||| |||| | ||| | ||| || |||||| |||||
Sbjct 194568 ACTACATTAAATCCTAAGTCCTTTGCTTTTTGCT-CATCGAACTTTTCATCTAAATGCAT 194510
Query 58782 ACAATACACTCT--GTCTCGTCTCTCTGT---AACTAGCTCGTCCAACTTCCGTAAGGAT 58836
||| | ||| | |||| | |||| ||| | | | ||| || || |||| |||||||
Sbjct 194509 ACAGAAGACTTTATGTCTTGCCTCT-TGTTTGATCGA-CTCATCTAATTTCCTTAAGGAT 194452
Query 58837 AAGTGTACATTACCTTCGTAATCAGCTTTGCATGTGTCTTGATAAAAGTAATC 58889
| || ||||| ||||| || ||| |||||||||||||||||||||| ||
Sbjct 194451 AGATGAACATTCTTCTCGTAGTCTGCTATGCATGTGTCTTGATAAAAGTAGTC 194399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 518441619409280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |