Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018863.1 Length=162596 Score E Sequences producing significant alignments: (Bits) Value seq149378 113 5e-20 seq158858 82.4 8e-11 >seq149378 Length=35185 Score = 113 bits (124), Expect = 5e-20 Identities = 154/207 (74%), Gaps = 10/207 (5%) Strand=Plus/Minus Query 147921 AACGTTCTACCGTTACAGAACCTTCGTA-ACGT-AAGTATACGTGTTCCTGTGGCATGAT 147978 ||||||| || | ||| | ||| |||| || | ||| |||||||||| ||||||||||| Sbjct 32986 AACGTTCAACTGATACCGTACC--CGTATACTTTAAGAATACGTGTTCATGTGGCATGAT 32929 Query 147979 TGAACCAATTTGGTAAACACCTTGAGTACCGAATGAACGTTCAG-AGCTGATAGATTGAG 148037 |||||||| || || |||||||| ||||||||||| || ||| || | || ||||||| Sbjct 32928 TGAACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAAT-GATTGAG 32870 Query 148038 CGCGGGCAATCGGAACGTTCTTAATCATGAAGT--ACACGGTATTTGCCGATTGGACAGT 148095 | || |||| ||||||||||||||| | | |||| || | | || || || Sbjct 32869 CACGACCAATAACTTCGTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGT 32812 Query 148096 TTGGTTAGCTAAACTTGCCATATATTC 148122 ||| || || | |||||||||| || Sbjct 32811 TTGCTTTGCAAGTGTTGCCATATAGTC 32785 >seq158858 Length=235449 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Minus Query 58723 ACTACGTTGAAACCTAACTCCTCTGCTAAT-GCTACCGGGAATCCTTTATCTAAGTGCAT 58781 ||||| || || ||||| |||| |||| | ||| | ||| || |||||| ||||| Sbjct 194568 ACTACATTAAATCCTAAGTCCTTTGCTTTTTGCT-CATCGAACTTTTCATCTAAATGCAT 194510 Query 58782 ACAATACACTCT--GTCTCGTCTCTCTGT---AACTAGCTCGTCCAACTTCCGTAAGGAT 58836 ||| | ||| | |||| | |||| ||| | | | ||| || || |||| ||||||| Sbjct 194509 ACAGAAGACTTTATGTCTTGCCTCT-TGTTTGATCGA-CTCATCTAATTTCCTTAAGGAT 194452 Query 58837 AAGTGTACATTACCTTCGTAATCAGCTTTGCATGTGTCTTGATAAAAGTAATC 58889 | || ||||| ||||| || ||| |||||||||||||||||||||| || Sbjct 194451 AGATGAACATTCTTCTCGTAGTCTGCTATGCATGTGTCTTGATAAAAGTAGTC 194399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518441619409280