Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq26661 109 4e-19 seq117562 107 1e-18 seq210337 100 2e-16 seq54724 100 2e-16 seq214945 91.5 1e-13 seq153189 84.2 2e-11 >seq26661 Length=2801 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| ||||| || ||||| || | |||| ||||| Sbjct 1847 AGACGCAACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGA 1788 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| ||||| || |||| || ||| || |||| || | || ||| Sbjct 1787 CCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCC 1728 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | | | ||||| ||| ||||| | ||| Sbjct 1727 TTGTCCTGGATTTTTGCTTTCACGTTATCAATGGTGTCTGAGCTCTCGACCTCGAGGGTA 1668 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || || ||||| |||||||| Sbjct 1667 ATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630 >seq117562 Length=2070 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| ||||||||||| || | || | || | || || Sbjct 1895 ACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGCTAAGGTGCGTCCATCTTCG 1836 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||||||||| || |||| ||| ||||||| || | || |||||||| | Sbjct 1835 AGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGA 1776 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || || ||| ||||||| ||||| || || Sbjct 1775 ATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCTTG 1716 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || ||||| || ||||| Sbjct 1715 CCTGTCAAAGTCTTCACAAAGATTTGCAT 1687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||| | ||| || || ||| || || || |||||||| | Sbjct 1457 CCACCTCTGAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAATCCGCC 1398 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | |||| || | |||||||||||| || || |||| || ||||||| ||| Sbjct 1397 AGAGTCCTTCCGTCTTCAAGCTGCTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1338 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| ||| || | | | || ||||| || || Sbjct 1337 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATAGTATCTGAGCTTTCGACT 1278 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || ||||| |||||||| || || || || ||||| Sbjct 1277 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 1231 >seq210337 Length=1863 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || ||| |||||| || ||||||||||||| ||| | | Sbjct 1279 AGACGCAACACAAGGTGGAGAGTGGACTCTTTCTGGATATTGTAATCAGCCAGAGTCCTT 1338 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||| || || |||| || ||||||| || | || ||| Sbjct 1339 CCATCTTCAAGCTGCTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGGATACCTTCC 1398 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || ||||| ||| ||||| | || Sbjct 1399 TTGTCCTGGATCTTAGCCTTGACGTTATCAATAGTATCTGAGCTCTCAACCTCAAGAGTG 1458 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| ||| || ||||| |||||||| Sbjct 1459 ATGGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 1496 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| ||||| ||| ||||||||| || |||||||| | Sbjct 1042 CCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCA 1101 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | |||||||||||||| || |||| ||| ||||||| || Sbjct 1102 AGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 1161 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||||| || ||| | | | | || || ||| ||| Sbjct 1162 ATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAACC 1221 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | ||| || ||||| || ||||| Sbjct 1222 TCAAGAGTAATGGTTTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||| |||||||||||||| | | | | ||| | || || Sbjct 376 ACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTCA 435 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| ||||| || || || |||| |||||| |||| || | || || ||||| | Sbjct 436 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGA 495 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || || ||| ||||||| ||||| || || Sbjct 496 ATTTTAGCCTTCACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCTTG 555 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || ||||| || ||||| Sbjct 556 CCTGTCAAAGTCTTCACAAAGATTTGCAT 584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||| || || || ||||| || | || | || Sbjct 823 AGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGT 882 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || ||||||||||||||||| || |||| ||| || |||| || | ||||| Sbjct 883 CCATCTTCTAACTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATTCCCTCT 942 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | | ||||| ||||||||||| || Sbjct 943 TTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAAGTG 1002 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | || || ||||| |||||||| Sbjct 1003 ATGGTTTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 1040 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || ||| || ||||| |||||||| | | | | ||| Sbjct 595 AGACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCCAAAGTCCGA 654 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| || || || |||| || ||||||| || | || ||| Sbjct 655 CCATCCTCGAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGGATACCTTCC 714 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| ||||||||| | ||| Sbjct 715 TTGTCCTGGATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCCACCTCAAGAGTA 774 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || || ||||||||||| Sbjct 775 ATGGTTTTACCGGTAAGGGTCTTCACGAAAATCTGCAT 812 >seq54724 Length=7877 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || |||||| ||||||||||| || | ||| ||| Sbjct 2092 AGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTG 2033 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| || ||| || |||| || | || || Sbjct 2032 CCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCT 1973 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | ||||| ||| ||||| | ||| Sbjct 1972 TTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTA 1913 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || || ||||| |||||||| Sbjct 1912 ATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 >seq214945 Length=15579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| |||||| ||||||||| || | | ||| | || || | ||| ||||||||||| Sbjct 7570 CTCTTTCTGAATACTGTAATCAGCTAAAGTCCGACCATCTTCTAGCTGTTTACCGGCAAA 7629 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | |||||| || | |||| || || ||||| ||||| || || Sbjct 7630 GATTAGCCTCTGTTGGTCAGGTGGAATCCCTTCTTTGTCTTGTATCTTCGCCTTCACGTT 7689 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||| | ||||| || || ||||||||||| || || Sbjct 7690 ATCAATCGTATCCGAGCTCTCTACCTCAAGAGTAATGGTCTTCCCCGTCAAAGTCTTGAC 7749 Query 48755 AAAAATCTGCATC 48767 ||| || |||||| Sbjct 7750 AAAGATTTGCATC 7762 >seq153189 Length=17048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || ||||| ||||| || | | | || Sbjct 14498 AGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGT 14439 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| ||||| || |||| || ||| ||||||| |||| || ||| Sbjct 14438 CCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCC 14379 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | || || |||||||| | || Sbjct 14378 TTGTCCTGGATCTTGGCTTTAACATTGTCGATCGTGTCCGAGCTTTCCACCTCGAGGGTG 14319 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || | ||| || || || ||||||||| Sbjct 14318 ATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 14280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379696946710644