Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq249645 188 8e-43 seq26767 185 1e-41 >seq249645 Length=476466 Score = 188 bits (208), Expect = 8e-43 Identities = 304/437 (70%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 40708 AAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCC 40767 ||| | ||| |||| ||||| || ||| | ||||||||||| || |||||||||| | Sbjct 264547 AAAATCTCACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGC 264606 Query 40768 AGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGCG 40827 || || ||||||||| |||||| | | ||| | ||||| || ||| Sbjct 264607 TCGTGCGTCTTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCC 264666 Query 40828 ATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCT 40887 ||||| ||| | || || ||||||||||| || ||||||| || | || || || Sbjct 264667 ATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCC 264726 Query 40888 ATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAA 40947 | ||| |||||||| ||||||||| ||||| ||| ||| || || | ||| Sbjct 264727 CTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAA 264786 Query 40948 CACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACC 41007 | || ||||| ||||||| ||| || || || || || ||||| ||||| || || Sbjct 264787 TTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACG 264846 Query 41008 CTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGT 41067 ||| || || | |||||| | |||||||| | |||| || ||||||||||| Sbjct 264847 TTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGC 264906 Query 41068 GGCGTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATG 41127 || |||||||| |||||| | ||||| |||| || ||||||||| | ||| | |||| Sbjct 264907 GGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATG 264966 Query 41128 TATAAGCGTTTAATCAA 41144 || | ||| | ||||| Sbjct 264967 TACACGCGCCTCATCAA 264983 >seq26767 Length=1149 Score = 185 bits (204), Expect = 1e-41 Identities = 309/447 (69%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 40684 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 40743 || ||||| || ||||| | ||| | || ||||| || || |||||| | || || Sbjct 476 TTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTT 417 Query 40744 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGT 40803 | |||||||| || || || | |||||| |||| |||| | |||| ||| | | Sbjct 416 AGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGAT 357 Query 40804 TCTCTGAACGCTGTTACGTCCGCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGT 40863 ||| | |||||| ||| | || || || ||| | |||||||| || || |||||| Sbjct 356 TCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGT 297 Query 40864 GTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACAT 40923 | || || ||| | ||||| || | ||| || | ||| |||||| | ||| Sbjct 296 ATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCAT 237 Query 40924 ACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGC 40983 || || ||| || || | ||||| |||| | || || ||||||||||| || || Sbjct 236 ACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGA 177 Query 40984 GGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAAC 41043 || ||| | ||||| || ||||| | | |||||| || |||||| ||||| |||||| Sbjct 176 GGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAGT 117 Query 41044 CTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTAT 41103 | || ||| | |||||||| | ||| |||||||||| | | |||||| | |||||| Sbjct 116 TTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTAT 57 Query 41104 GGCGTACAGCTTAACGATTTGATGTAT 41130 | ||||| |||| | ||||||||| Sbjct 56 GCAGTACAAATTAATAAATTGATGTAT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568185301204640