Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019398.1
Length=178193
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 188 8e-43
seq26767 185 1e-41
>seq249645
Length=476466
Score = 188 bits (208), Expect = 8e-43
Identities = 304/437 (70%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 40708 AAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCC 40767
||| | ||| |||| ||||| || ||| | ||||||||||| || |||||||||| |
Sbjct 264547 AAAATCTCACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGC 264606
Query 40768 AGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGCG 40827
|| || ||||||||| |||||| | | ||| | ||||| || |||
Sbjct 264607 TCGTGCGTCTTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCC 264666
Query 40828 ATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCT 40887
||||| ||| | || || ||||||||||| || ||||||| || | || || ||
Sbjct 264667 ATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCC 264726
Query 40888 ATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAA 40947
| ||| |||||||| ||||||||| ||||| ||| ||| || || | |||
Sbjct 264727 CTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAA 264786
Query 40948 CACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACC 41007
| || ||||| ||||||| ||| || || || || || ||||| ||||| || ||
Sbjct 264787 TTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACG 264846
Query 41008 CTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGT 41067
||| || || | |||||| | |||||||| | |||| || |||||||||||
Sbjct 264847 TTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGC 264906
Query 41068 GGCGTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATG 41127
|| |||||||| |||||| | ||||| |||| || ||||||||| | ||| | ||||
Sbjct 264907 GGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATG 264966
Query 41128 TATAAGCGTTTAATCAA 41144
|| | ||| | |||||
Sbjct 264967 TACACGCGCCTCATCAA 264983
>seq26767
Length=1149
Score = 185 bits (204), Expect = 1e-41
Identities = 309/447 (69%), Gaps = 0/447 (0%)
Strand=Plus/Minus
Query 40684 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 40743
|| ||||| || ||||| | ||| | || ||||| || || |||||| | || ||
Sbjct 476 TTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTT 417
Query 40744 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGT 40803
| |||||||| || || || | |||||| |||| |||| | |||| ||| | |
Sbjct 416 AGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGAT 357
Query 40804 TCTCTGAACGCTGTTACGTCCGCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGT 40863
||| | |||||| ||| | || || || ||| | |||||||| || || ||||||
Sbjct 356 TCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGT 297
Query 40864 GTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACAT 40923
| || || ||| | ||||| || | ||| || | ||| |||||| | |||
Sbjct 296 ATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCAT 237
Query 40924 ACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGC 40983
|| || ||| || || | ||||| |||| | || || ||||||||||| || ||
Sbjct 236 ACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGA 177
Query 40984 GGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAAC 41043
|| ||| | ||||| || ||||| | | |||||| || |||||| ||||| ||||||
Sbjct 176 GGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAGT 117
Query 41044 CTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTAT 41103
| || ||| | |||||||| | ||| |||||||||| | | |||||| | ||||||
Sbjct 116 TTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTAT 57
Query 41104 GGCGTACAGCTTAACGATTTGATGTAT 41130
| ||||| |||| | |||||||||
Sbjct 56 GCAGTACAAATTAATAAATTGATGTAT 30
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568185301204640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |