Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq26767 223 4e-53 seq249645 132 5e-26 seq252826 84.2 2e-11 seq127984 82.4 8e-11 >seq26767 Length=1149 Score = 223 bits (246), Expect = 4e-53 Identities = 327/460 (71%), Gaps = 6/460 (1%) Strand=Plus/Plus Query 138531 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATT 138590 ||| | ||| || ||||||| | ||||| | | |||||||| | ||| | ||||| Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101 Query 138591 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138650 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161 Query 138651 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 138710 || || | || ||| || || || || ||||| || ||| | ||||||||||| |||| Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221 Query 138711 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAAT 138770 ||||||| ||||||||| | |||| || | | ||| | |||| | |||||||| Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281 Query 138771 CATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGA 138830 | ||| | |||||||||||||| || |||| ||| | ||||| ||||| ||| | Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341 Query 138831 AGCCTTGTTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAACACATGAACTAAA 138887 || ||| ||||| | || || | ||||| | ||||| | ||||||||| ||||| Sbjct 342 AGTAGCGTTAATAGAATCTAGATTATCATCACAT---TCAATTAAAACACATGAGCTAAA 398 Query 138888 CTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGT 138947 |||||||| ||||| | | |||| |||||| || || ||||| ||||| | ||| Sbjct 399 TTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGT 458 Query 138948 AGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 138987 || | || | ||||||||| ||||| || | |||| Sbjct 459 TGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498 >seq249645 Length=476466 Score = 132 bits (146), Expect = 5e-26 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 138538 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138597 || ||||| || ||||||||||||| |||||| ||||| || || ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 138598 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138657 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 138658 CGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138717 || | ||||| |||||||| ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 138718 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCAGCACGAATCATA 138774 |||||||| || ||||||| |||| ||| ||| ||||| || | Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714 Query 138775 CCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG---AAGCGGAA 138831 || |||| || || || ||||| || | || | ||| || || | || || Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654 Query 138832 GCCTTGTTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGT 138891 || ||||||||| | ||| |||||| || || | || || || |||||||| Sbjct 264653 GC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGA 264597 Query 138892 CGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 138938 || | || ||||| ||| | ||| || || ||||||| ||| || Sbjct 264596 CGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 137581 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 137640 ||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| | Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857 Query 137641 CCACGTGGAGGCTCGATACCGTTTGT 137666 |||||||| |||||||||||||| || Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 68567 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 68626 |||||| || || ||| ||||||| | |||||| || ||||||||| |||||||||||| Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963 Query 68627 ACTGAGCTAAATCAGC 68642 |||||||||| || || Sbjct 191962 ACTGAGCTAAGTCGGC 191947 >seq127984 Length=21361 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 68821 AATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATGC 68880 ||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | | Sbjct 19913 AATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTTAC 19854 Query 68881 CATTATACGATATCCGCAAA 68900 || || || | | ||||||| Sbjct 19853 CACTAAACTACACCCGCAAA 19834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533750311633280